EY719583

Overview
NameEY719583
Unique NameEY719583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1007
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_KLEP3 (Recombination-associated protein rdgC OS=Klebsiella pneumoniae (strain 342) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 48/126 (38.10%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++D+ +               PC SQ++   G+V+P G   DA L H +   ++I ARKEE+ILP  V++            +Q RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSRDIELRAEEMEKQLAELTFTPCGSQDMAKTGWVSPMGSHSDA-LTHTANGQIIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECOSM (Recombination-associated protein rdgC OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECOSE (Recombination-associated protein rdgC OS=Escherichia coli (strain SE11) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECOLU (Recombination-associated protein rdgC OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECOLI (Recombination-associated protein rdgC OS=Escherichia coli (strain K12) GN=rdgC PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECOLC (Recombination-associated protein rdgC OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECOL6 (Recombination-associated protein rdgC OS=Escherichia coli O6 GN=rdgC PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECOL5 (Recombination-associated protein rdgC OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECOHS (Recombination-associated protein rdgC OS=Escherichia coli O9:H4 (strain HS) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECODH (Recombination-associated protein rdgC OS=Escherichia coli (strain K12 / DH10B) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
The following BLAST results are available for this feature:
BLAST of EY719583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
RDGC_KLEP33.961e-1938.10Recombination-associated protein rdgC OS=Klebsiell... [more]
RDGC_ECOSM3.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECOSE3.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECOLU3.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECOLI3.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECOLC3.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECOL63.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECOL53.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECOHS3.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECODH3.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-104-B02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY719583 ID=EY719583; Name=EY719583; organism=Citrus sinensis; type=EST; length=1007bp
GGACCGGGGTCCGGAAATTCCGGGTCGACGAGCGACGGATGAACGCGCGC
GGCAGGAAGGCCTGGATGATTTCATCCTTGATCTGGTCGCGTTCCTTTTT
GTAGACCTTGCGCATTTGCTCGGCTTCGATCTCTTCGACCTTTTCCTTCA
CCGCATCACGCACCACGCTGCCCGGCAGGATACGTTCTTCCTTGCGCGCA
GCGATCAGCAGGAAATCACCGCTGACGTGCACCAGGGGCGCGTCTTCGCC
TTTACCGAAAGGGGCGACGAAACCGTAAGTGGTCAACTCCTGGCTTGCAC
AAGGGCGCGCCAGTTTGGTGGCCAGTGCAGTTTCCAACGCCTCGGCATCA
ACAGGCAGATCTTGGGTCAGGCGATAGATAAGCAGGTTTTTGAACCACAT
GGGGTGAGTCTCTCCTTATATACAAAGGGGGGCATTATTCTCCTCATGGC
GTCATAGGCCAACCCTCGCTAAGCCATTGGAAGGCCTGAAAAAAATTATT
TAAGAAAGTGCTTGCCAGACCATGGGTCGCTCCGTAAAATGCGCGCCACA
CCGAAAGTGAAGGGGGAATAAGCTTCAGCTGGGAAAGCTCCGGCCTTAAA
AGCAGAAAGTCGGGGGTTCAAACGCGCTACATACCGTCCATTCAGATTAC
AAGGGGAAAGCGACAAGAAATGAAGGTGTGGGTATACAGAGCACGTGTGT
AAAGTAAGAGTGTAATGGTTTGAAAATTACGAGAGACATGTACATCATTT
GATAAGTATGTGTAGAGAGGATGTGGAGGATATATCAGAAGACATTATAT
AAAGATCAAAGCGTGTTATTATTCTAGTAAGATATTATTGTTGAATATAG
GGTGTAGTAAGTTTATAATAATAGAAGAAAGTTAGTGATTAATATTAGTG
AGCGTTAATAGAGTAGCGAAAAGAGAATAATTATGTGGAATAAGATGGGA
AAGAAAAGAAAAAGAAAAAAAGAGCAGAGACAAAATAAAAGAAAGAATAA
AAAAAAT
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