EY719583

Overview
NameEY719583
Unique NameEY719583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1007
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECOBW (Recombination-associated protein rdgC OS=Escherichia coli (strain K12 / BW2952) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECO8A (Recombination-associated protein rdgC OS=Escherichia coli O8 (strain IAI1) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECO81 (Recombination-associated protein rdgC OS=Escherichia coli O81 (strain ED1a) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECO7I (Recombination-associated protein rdgC OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECO5E (Recombination-associated protein rdgC OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECO57 (Recombination-associated protein rdgC OS=Escherichia coli O157:H7 GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECO55 (Recombination-associated protein rdgC OS=Escherichia coli (strain 55989 / EAEC) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECO45 (Recombination-associated protein rdgC OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECO27 (Recombination-associated protein rdgC OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_ECO24 (Recombination-associated protein rdgC OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rdgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.961e-19
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R S T
Sbjct:    2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQT 126
The following BLAST results are available for this feature:
BLAST of EY719583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
RDGC_ECOBW3.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECO8A3.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECO813.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECO7I3.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECO5E3.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECO573.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECO553.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECO453.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECO273.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECO243.961e-1938.89Recombination-associated protein rdgC OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-104-B02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY719583 ID=EY719583; Name=EY719583; organism=Citrus sinensis; type=EST; length=1007bp
GGACCGGGGTCCGGAAATTCCGGGTCGACGAGCGACGGATGAACGCGCGC
GGCAGGAAGGCCTGGATGATTTCATCCTTGATCTGGTCGCGTTCCTTTTT
GTAGACCTTGCGCATTTGCTCGGCTTCGATCTCTTCGACCTTTTCCTTCA
CCGCATCACGCACCACGCTGCCCGGCAGGATACGTTCTTCCTTGCGCGCA
GCGATCAGCAGGAAATCACCGCTGACGTGCACCAGGGGCGCGTCTTCGCC
TTTACCGAAAGGGGCGACGAAACCGTAAGTGGTCAACTCCTGGCTTGCAC
AAGGGCGCGCCAGTTTGGTGGCCAGTGCAGTTTCCAACGCCTCGGCATCA
ACAGGCAGATCTTGGGTCAGGCGATAGATAAGCAGGTTTTTGAACCACAT
GGGGTGAGTCTCTCCTTATATACAAAGGGGGGCATTATTCTCCTCATGGC
GTCATAGGCCAACCCTCGCTAAGCCATTGGAAGGCCTGAAAAAAATTATT
TAAGAAAGTGCTTGCCAGACCATGGGTCGCTCCGTAAAATGCGCGCCACA
CCGAAAGTGAAGGGGGAATAAGCTTCAGCTGGGAAAGCTCCGGCCTTAAA
AGCAGAAAGTCGGGGGTTCAAACGCGCTACATACCGTCCATTCAGATTAC
AAGGGGAAAGCGACAAGAAATGAAGGTGTGGGTATACAGAGCACGTGTGT
AAAGTAAGAGTGTAATGGTTTGAAAATTACGAGAGACATGTACATCATTT
GATAAGTATGTGTAGAGAGGATGTGGAGGATATATCAGAAGACATTATAT
AAAGATCAAAGCGTGTTATTATTCTAGTAAGATATTATTGTTGAATATAG
GGTGTAGTAAGTTTATAATAATAGAAGAAAGTTAGTGATTAATATTAGTG
AGCGTTAATAGAGTAGCGAAAAGAGAATAATTATGTGGAATAAGATGGGA
AAGAAAAGAAAAAGAAAAAAAGAGCAGAGACAAAATAAAAGAAAGAATAA
AAAAAAT
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