EY719583

Overview
NameEY719583
Unique NameEY719583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1007
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_PROMH (Recombination-associated protein rdgC OS=Proteus mirabilis (strain HI4320) GN=rdgC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.353e-18
Identity = 46/126 (36.51%), Postives = 75/126 (59.52%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKN+L+YRL +++ +               PC+SQ++T  G+V+P G   +A L+HV+G  +++ ARKE++ILP +V++            EQ RK+ K E+  +KDE++   LPRAF + S T
Sbjct:    2 LWFKNILVYRLNKEIALSMDELEQQLASLAFTPCSSQDMTKTGWVSPMGDRGEA-LIHVAGKQVMMCARKEDKILPATVIKQALQDKVEKLEGEQGRKLKKTEKATLKDEVVHTLLPRAFSKFSQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_AERHH (Recombination-associated protein rdgC OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rdgC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.353e-18
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            MWFKNL IYR T+   +               PC SQ+++ +G+V P GK   + L H +   +LI ARKEE++LPG+VV++           EQ R + KKE++ +K+EI+   LPRAF R S T
Sbjct:    1 MWFKNLQIYRFTRPFELTVEQLETQLEACAFTPCGSQDISRFGWVKPLGKF-GSTLTHSAAGHILICARKEEKMLPGTVVKEMLAEKVEAIEFEQGRALKKKEKEALKEEILHTLLPRAFSRTSQT 125
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_YERPY (Recombination-associated protein rdgC OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rdgC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.380e-18
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V+P G   DA L H     ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R + T
Sbjct:    2 LWFKNLMVYRLSREVSLSADEMEKQLSAFSFTPCGSQDMAKTGWVSPMGSHSDA-LTHTVNGQIVICARKEEKILPSPVIKQELQDKIERLEGEQHRKLKKTEKDSLKDEVLHSLLPRAFSRFNQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_YERPP (Recombination-associated protein rdgC OS=Yersinia pestis (strain Pestoides F) GN=rdgC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.380e-18
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V+P G   DA L H     ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R + T
Sbjct:    2 LWFKNLMVYRLSREVSLSADEMEKQLSAFSFTPCGSQDMAKTGWVSPMGSHSDA-LTHTVNGQIVICARKEEKILPSPVIKQELQDKIERLEGEQHRKLKKTEKDSLKDEVLHSLLPRAFSRFNQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_YERPN (Recombination-associated protein rdgC OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rdgC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.380e-18
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V+P G   DA L H     ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R + T
Sbjct:    2 LWFKNLMVYRLSREVSLSADEMEKQLSAFSFTPCGSQDMAKTGWVSPMGSHSDA-LTHTVNGQIVICARKEEKILPSPVIKQELQDKIERLEGEQHRKLKKTEKDSLKDEVLHSLLPRAFSRFNQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_YERPE (Recombination-associated protein rdgC OS=Yersinia pestis GN=rdgC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.380e-18
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V+P G   DA L H     ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R + T
Sbjct:    2 LWFKNLMVYRLSREVSLSADEMEKQLSAFSFTPCGSQDMAKTGWVSPMGSHSDA-LTHTVNGQIVICARKEEKILPSPVIKQELQDKIERLEGEQHRKLKKTEKDSLKDEVLHSLLPRAFSRFNQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_YERPB (Recombination-associated protein rdgC OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rdgC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.380e-18
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V+P G   DA L H     ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R + T
Sbjct:    2 LWFKNLMVYRLSREVSLSADEMEKQLSAFSFTPCGSQDMAKTGWVSPMGSHSDA-LTHTVNGQIVICARKEEKILPSPVIKQELQDKIERLEGEQHRKLKKTEKDSLKDEVLHSLLPRAFSRFNQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_YERPA (Recombination-associated protein rdgC OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rdgC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.380e-18
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V+P G   DA L H     ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R + T
Sbjct:    2 LWFKNLMVYRLSREVSLSADEMEKQLSAFSFTPCGSQDMAKTGWVSPMGSHSDA-LTHTVNGQIVICARKEEKILPSPVIKQELQDKIERLEGEQHRKLKKTEKDSLKDEVLHSLLPRAFSRFNQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_YERP3 (Recombination-associated protein rdgC OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rdgC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.380e-18
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V+P G   DA L H     ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R + T
Sbjct:    2 LWFKNLMVYRLSREVSLSADEMEKQLSAFSFTPCGSQDMAKTGWVSPMGSHSDA-LTHTVNGQIVICARKEEKILPSPVIKQELQDKIERLEGEQHRKLKKTEKDSLKDEVLHSLLPRAFSRFNQT 126
[Close]
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_YERE8 (Recombination-associated protein rdgC OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rdgC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.380e-18
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = -2 
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            +WFKNL++YRL++++ +               PC SQ++   G+V+P G   DA L H     ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R + T
Sbjct:    2 LWFKNLMVYRLSREVSLSADEMEKQLSAFSFTPCGSQDMAKTGWVSPMGSHSDA-LTHTVNGQIVICARKEEKILPSPVIKQELQAKIERLEGEQHRKLKKTEKDSLKDEVLHSLLPRAFSRFNQT 126
The following BLAST results are available for this feature:
BLAST of EY719583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
RDGC_PROMH3.353e-1836.51Recombination-associated protein rdgC OS=Proteus m... [more]
RDGC_AERHH3.353e-1839.68Recombination-associated protein rdgC OS=Aeromonas... [more]
RDGC_YERPY4.380e-1837.30Recombination-associated protein rdgC OS=Yersinia ... [more]
RDGC_YERPP4.380e-1837.30Recombination-associated protein rdgC OS=Yersinia ... [more]
RDGC_YERPN4.380e-1837.30Recombination-associated protein rdgC OS=Yersinia ... [more]
RDGC_YERPE4.380e-1837.30Recombination-associated protein rdgC OS=Yersinia ... [more]
RDGC_YERPB4.380e-1837.30Recombination-associated protein rdgC OS=Yersinia ... [more]
RDGC_YERPA4.380e-1837.30Recombination-associated protein rdgC OS=Yersinia ... [more]
RDGC_YERP34.380e-1837.30Recombination-associated protein rdgC OS=Yersinia ... [more]
RDGC_YERE84.380e-1837.30Recombination-associated protein rdgC OS=Yersinia ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-104-B02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY719583 ID=EY719583; Name=EY719583; organism=Citrus sinensis; type=EST; length=1007bp
GGACCGGGGTCCGGAAATTCCGGGTCGACGAGCGACGGATGAACGCGCGC
GGCAGGAAGGCCTGGATGATTTCATCCTTGATCTGGTCGCGTTCCTTTTT
GTAGACCTTGCGCATTTGCTCGGCTTCGATCTCTTCGACCTTTTCCTTCA
CCGCATCACGCACCACGCTGCCCGGCAGGATACGTTCTTCCTTGCGCGCA
GCGATCAGCAGGAAATCACCGCTGACGTGCACCAGGGGCGCGTCTTCGCC
TTTACCGAAAGGGGCGACGAAACCGTAAGTGGTCAACTCCTGGCTTGCAC
AAGGGCGCGCCAGTTTGGTGGCCAGTGCAGTTTCCAACGCCTCGGCATCA
ACAGGCAGATCTTGGGTCAGGCGATAGATAAGCAGGTTTTTGAACCACAT
GGGGTGAGTCTCTCCTTATATACAAAGGGGGGCATTATTCTCCTCATGGC
GTCATAGGCCAACCCTCGCTAAGCCATTGGAAGGCCTGAAAAAAATTATT
TAAGAAAGTGCTTGCCAGACCATGGGTCGCTCCGTAAAATGCGCGCCACA
CCGAAAGTGAAGGGGGAATAAGCTTCAGCTGGGAAAGCTCCGGCCTTAAA
AGCAGAAAGTCGGGGGTTCAAACGCGCTACATACCGTCCATTCAGATTAC
AAGGGGAAAGCGACAAGAAATGAAGGTGTGGGTATACAGAGCACGTGTGT
AAAGTAAGAGTGTAATGGTTTGAAAATTACGAGAGACATGTACATCATTT
GATAAGTATGTGTAGAGAGGATGTGGAGGATATATCAGAAGACATTATAT
AAAGATCAAAGCGTGTTATTATTCTAGTAAGATATTATTGTTGAATATAG
GGTGTAGTAAGTTTATAATAATAGAAGAAAGTTAGTGATTAATATTAGTG
AGCGTTAATAGAGTAGCGAAAAGAGAATAATTATGTGGAATAAGATGGGA
AAGAAAAGAAAAAGAAAAAAAGAGCAGAGACAAAATAAAAGAAAGAATAA
AAAAAAT
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