EY749271

Overview
NameEY749271
Unique NameEY749271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig226 contig Csv1_Contig226:412..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 182
            T  GKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKEST
Sbjct:    7 TLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKEST 66          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 3
Query:   18 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 182
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 55          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.163e-22
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 182
            T  G TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKEST
Sbjct:    7 TLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKEST 66          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.157e-18
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 182
            T  GKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKEST
Sbjct:    7 TLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKEST 66          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.070e-17
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 182
            T  GKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKEST
Sbjct:    7 TLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKEST 66          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 170
            T  GK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+
Sbjct:    7 TLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.563e-13
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 170
            T  GK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.563e-13
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 170
            T  GK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.563e-13
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 170
            T  GK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.037e-12
Identity = 29/56 (51.79%), Postives = 43/56 (76.79%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 170
            T  GK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q
Sbjct:    7 TLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQ 62          
The following BLAST results are available for this feature:
BLAST of EY749271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
UBIQ_LEIMA2.227e-2388.33Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LUMTE6.478e-2394.55Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIQ_LEITA7.163e-2285.00Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP2.157e-1873.33Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC1.070e-1770.00Ubiquitin-like protein OS=Autographa californica n... [more]
RUB1_DESAN2.728e-1358.93NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ3.563e-1357.14NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ3.563e-1357.14NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH3.563e-1357.14NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME1.037e-1251.79NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-072-A03-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY749271 ID=EY749271; Name=EY749271; organism=Citrus sinensis; type=EST; length=396bp
CCACGCGTCCGGGGAAGACGATTACCCTGGAGGTGGAGAGTTCGGATACC
ATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATCCCACCTGA
TCAGCAGAGGCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGCCGTACTC
TTGCTGATTACAACATTCAGAAGGAGTCCACTCTTCATCTCGTCCTCCGT
CTCCGTGGTGGTGGTTTCTGAGGGACGTGTCAATGTATTTTCTGTTCAAG
CTGGTCGCTATGTTGTCTTGTCTTCTTGAAGAAGACTAGTTATCATTGAT
AATATTGTCTTTTGTTTTTATAAGTTGTTTGTTGAACAAGTTATGCTTTC
GAATAAAAATCTCTAGTTCAAATAAAAAAAAAAAAAAAAAAAAAAA
back to top