EY749271

Overview
NameEY749271
Unique NameEY749271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 167
            T  GK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +
Sbjct:    7 TLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKV 61          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.016e-12
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 170
            T  GK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIE 62          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 179
            T  GK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S
Sbjct:    7 TLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGS 65          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.553e-11
Identity = 27/55 (49.09%), Postives = 42/55 (76.36%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 167
            T  GK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I
Sbjct:    7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKI 61          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.553e-11
Identity = 27/55 (49.09%), Postives = 42/55 (76.36%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 167
            T  GK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I
Sbjct:    7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKI 61          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.553e-11
Identity = 27/55 (49.09%), Postives = 42/55 (76.36%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 167
            T  GK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I
Sbjct:    7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKI 61          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.553e-11
Identity = 27/55 (49.09%), Postives = 42/55 (76.36%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 167
            T  GK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I
Sbjct:    7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKI 61          
BLAST of EY749271 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.553e-11
Identity = 27/55 (49.09%), Postives = 42/55 (76.36%), Query Frame = 3
Query:    3 TRPGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 167
            T  GK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I
Sbjct:    7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKI 61          
The following BLAST results are available for this feature:
BLAST of EY749271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
NEDD8_CAEEL1.768e-1254.55NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB2_ARATH3.016e-1255.36NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
RUB3_ORYSJ1.497e-1149.15NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
NEDD8_RAT2.553e-1149.09NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT2.553e-1149.09NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE2.553e-1149.09NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN2.553e-1149.09NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN2.553e-1149.09NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-072-A03-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY749271 ID=EY749271; Name=EY749271; organism=Citrus sinensis; type=EST; length=396bp
CCACGCGTCCGGGGAAGACGATTACCCTGGAGGTGGAGAGTTCGGATACC
ATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATCCCACCTGA
TCAGCAGAGGCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGCCGTACTC
TTGCTGATTACAACATTCAGAAGGAGTCCACTCTTCATCTCGTCCTCCGT
CTCCGTGGTGGTGGTTTCTGAGGGACGTGTCAATGTATTTTCTGTTCAAG
CTGGTCGCTATGTTGTCTTGTCTTCTTGAAGAAGACTAGTTATCATTGAT
AATATTGTCTTTTGTTTTTATAAGTTGTTTGTTGAACAAGTTATGCTTTC
GAATAAAAATCTCTAGTTCAAATAAAAAAAAAAAAAAAAAAAAAAA
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