EY695515

Overview
NameEY695515
Unique NameEY695515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY695515_ssr57 microsatellite EY695515_ssr57:57..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_GINCI (Nucleoside diphosphate kinase (Fragment) OS=Ginglymostoma cirratum PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.028e-32
Identity = 70/148 (47.30%), Postives = 97/148 (65.54%), Query Frame = 2
Query:  344 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRESFMEVMAPRPARMR-SHCGSHPRLG*YTXHAEKWVYE 784
            ERTFIA+KPDGVQR ++ E+I RFE+KGFKLVA+K +   K+  +KHY +L ++PF+  L +++SSGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR       +   A+   S       L  Y   A+ W+YE
Sbjct:    4 ERTFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAKKEISLWFKREELVEYQNCAQDWIYE 151          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_BACC1 (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 10987) GN=ndk PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.522e-32
Identity = 58/111 (52.25%), Postives = 80/111 (72.07%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            ME+TF+ +KPDGVQR  I EI++RFE+KGF+LV  K++  + E A +HY +  E+PFF  L +F++SGPV AMVW+GEGV+   R ++G T P  + PGTIRGD  V V +
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAK 111          

HSP 2 Score: 27.335 bits (59), Expect = 4.522e-32
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWFTPE 741
            K IIHGSD  E+ + EI ++F  E
Sbjct:  111 KNIIHGSDSLESAEREIAIFFKEE 134          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_BACHK (Nucleoside diphosphate kinase OS=Bacillus thuringiensis subsp. konkukian GN=ndk PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.670e-32
Identity = 58/111 (52.25%), Postives = 80/111 (72.07%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            ME+TF+ +KPDGVQR  I EI++RFE+KGF+LV  K++  + E A +HY +  E+PFF  L +F++SGPV AMVW+GEGV+   R ++G T P  + PGTIRGD  V V +
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAK 111          

HSP 2 Score: 26.5646 bits (57), Expect = 7.670e-32
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWFTPE 741
            K IIHGSD  E+ + EI ++F  E
Sbjct:  111 KNIIHGSDSLESAEREIGIFFKEE 134          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_BACCZ (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ZK / E33L) GN=ndk PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.670e-32
Identity = 58/111 (52.25%), Postives = 80/111 (72.07%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            ME+TF+ +KPDGVQR  I EI++RFE+KGF+LV  K++  + E A +HY +  E+PFF  L +F++SGPV AMVW+GEGV+   R ++G T P  + PGTIRGD  V V +
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAK 111          

HSP 2 Score: 26.5646 bits (57), Expect = 7.670e-32
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWFTPE 741
            K IIHGSD  E+ + EI ++F  E
Sbjct:  111 KNIIHGSDSLESAEREIGIFFKEE 134          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_BACAN (Nucleoside diphosphate kinase OS=Bacillus anthracis GN=ndk PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.670e-32
Identity = 58/111 (52.25%), Postives = 80/111 (72.07%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            ME+TF+ +KPDGVQR  I EI++RFE+KGF+LV  K++  + E A +HY +  E+PFF  L +F++SGPV AMVW+GEGV+   R ++G T P  + PGTIRGD  V V +
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAK 111          

HSP 2 Score: 26.5646 bits (57), Expect = 7.670e-32
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWFTPE 741
            K IIHGSD  E+ + EI ++F  E
Sbjct:  111 KNIIHGSDSLESAEREIGIFFKEE 134          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_ARCFU (Nucleoside diphosphate kinase OS=Archaeoglobus fulgidus GN=ndk PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.928e-31
Identity = 69/149 (46.31%), Postives = 99/149 (66.44%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRESFMEVMAPRPA-RMRSHCGSHPRLG*YTXHAEKWVYE 784
            MERTF+ +KPDGVQRGL+ E+I R ERKG K+VA+K++  ++E A+ HY + +E+PFF+ L ++++SGPV+AMV EG+  I   R L+GAT+P  + PGTIRGD  + VGR       +P+ A R  S   S   +  +    E W+YE
Sbjct:    1 MERTFVMVKPDGVQRGLVGEVIGRLERKGLKIVAMKMLWIAREMAENHYAEHREKPFFSALVDYITSGPVVAMVVEGKNAIKVVRTLVGATNPAEAAPGTIRGDFGLDVGRNVVHASDSPQSAEREISLFFSDDEIVNWEKADEDWIYE 149          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STACT (Nucleoside diphosphate kinase OS=Staphylococcus carnosus (strain TM300) GN=ndk PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.824e-31
Identity = 71/150 (47.33%), Postives = 94/150 (62.67%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRESFMEVMAPRPARMRSHCGSHP-RLG*YTXHAEKWVYES 787
            MERTF+ IKPDGVQR L+ EII+R E+KG KLV  K +  SKE A+ HY +  ++PF+ GL  F++S PV AMV EGE V+   R +IG T+P  + PGTIRGDL + VGR       +   A+        P  L  YT + E+W+YE+
Sbjct:    1 MERTFLMIKPDGVQRKLVGEIITRLEKKGLKLVGGKFMTVSKEKAETHYGEHADKPFYEGLVSFITSAPVFAMVVEGENVVEVTRNMIGKTNPTEAAPGTIRGDLGLTVGRNVIHGSDSVESAKREISLWFEPNELSVYTANDEEWLYEN 150          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_BRUMA (Nucleoside diphosphate kinase OS=Brugia malayi GN=NDK PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.824e-31
Identity = 70/148 (47.30%), Postives = 94/148 (63.51%), Query Frame = 2
Query:  344 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRESFM-EVMAPRPARMRSHCGSHPRLG*YTXHAEKWVYE 784
            ERTFI IKPD VQRGLI +I  RFE++G+KLVA+K++  +K   + HY +L+ +PFFN L  ++SSGPVIAMVWEG  V+   R+++GAT+P  S PGTIRGD ++  GR         P   R  +H      L  ++     WVYE
Sbjct:    6 ERTFICIKPDAVQRGLIGKIFERFEQRGYKLVAMKMLKATKSHLEIHYQELQGKPFFNDLVGYMSSGPVIAMVWEGLDVVKQARQMLGATNPLNSMPGTIRGDFSIQTGRNIVHGSDSLPSAEREITHWFKPEELCEWSSATATWVYE 153          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAAU (Nucleoside diphosphate kinase OS=Staphylococcus aureus GN=ndk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111          

HSP 2 Score: 29.6462 bits (65), Expect = 1.075e-30
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  E+ + EI LWF
Sbjct:  111 RNIIHGSDSLESAEREINLWF 131          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAAT (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111          

HSP 2 Score: 29.6462 bits (65), Expect = 1.075e-30
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  E+ + EI LWF
Sbjct:  111 RNIIHGSDSLESAEREINLWF 131          
The following BLAST results are available for this feature:
BLAST of EY695515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_GINCI2.028e-3247.30Nucleoside diphosphate kinase (Fragment) OS=Gingly... [more]
NDK_BACC14.522e-3252.25Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACHK7.670e-3252.25Nucleoside diphosphate kinase OS=Bacillus thuringi... [more]
NDK_BACCZ7.670e-3252.25Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACAN7.670e-3252.25Nucleoside diphosphate kinase OS=Bacillus anthraci... [more]
NDK_ARCFU2.928e-3146.31Nucleoside diphosphate kinase OS=Archaeoglobus ful... [more]
NDK_STACT3.824e-3147.33Nucleoside diphosphate kinase OS=Staphylococcus ca... [more]
NDK_BRUMA3.824e-3147.30Nucleoside diphosphate kinase OS=Brugia malayi GN=... [more]
NDK_STAAU1.075e-3053.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAT1.075e-3053.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-037-C07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY695515 ID=EY695515; Name=EY695515; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGAGT
CTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGATCT
GCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAATTC
GCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTACAT
TCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTTCC
TCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACGCA
CTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAGAA
ATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAGAT
AGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAAGG
AAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAGTC
ATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAACT
CATTGGAGCCACAGATCCTCAGAGATCAGAACCTGGAACAATCAGAGGCG
ATCTAGCTGTTGTTGTTGGAAGAGAATCATTCATGGAAGTGATGGCCCCG
AGACCCGCAAGGATGAGATCACATTGTGGTTCACACCCGAGACTTGGTTA
ATACACAAGNCATGCAGAGAAGTGGGTCTATGAATCCACTGAGTACAATT
TTCTCTTACGTTTATAGAAACTTAGGNGCTACATGATAGTGCGATTAGAG
CATAACTGGTCCAAAAAATTTTGTTCTGTGAGATGAGTAAACACAACTTG
CTC
back to top