EY695515 | Citrus Genome Database

Overview


Name	EY695515
Unique Name	EY695515
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	903

Libraries


Library Name	Type
Sweet orange fruit, development stadium (1 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
EY695515_ssr57	microsatellite	EY695515_ssr57:57..71.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAAR (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MRSA252) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2

Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111

HSP 2 Score: 29.6462 bits (65), Expect = 1.075e-30
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  E+ + EI LWF
Sbjct:  111 RNIIHGSDSLESAEREINLWF 131

BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAAN (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain N315) GN=ndk PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2

Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111

HSP 2 Score: 29.6462 bits (65), Expect = 1.075e-30
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  E+ + EI LWF
Sbjct:  111 RNIIHGSDSLESAEREINLWF 131

BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAAM (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ndk PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2

Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111

HSP 2 Score: 29.6462 bits (65), Expect = 1.075e-30
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  E+ + EI LWF
Sbjct:  111 RNIIHGSDSLESAEREINLWF 131

BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAAE (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Newman) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2

Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111

HSP 2 Score: 29.6462 bits (65), Expect = 1.075e-30
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  E+ + EI LWF
Sbjct:  111 RNIIHGSDSLESAEREINLWF 131

BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAAC (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain COL) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2

Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111

HSP 2 Score: 29.6462 bits (65), Expect = 1.075e-30
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  E+ + EI LWF
Sbjct:  111 RNIIHGSDSLESAEREINLWF 131

BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAAB (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2

Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111

HSP 2 Score: 29.6462 bits (65), Expect = 1.075e-30
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  E+ + EI LWF
Sbjct:  111 RNIIHGSDSLESAEREINLWF 131

BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAA9 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH9) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2

Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111

HSP 2 Score: 29.6462 bits (65), Expect = 1.075e-30
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  E+ + EI LWF
Sbjct:  111 RNIIHGSDSLESAEREINLWF 131

BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAA8 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain NCTC 8325) GN=ndk PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2

Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111

HSP 2 Score: 29.6462 bits (65), Expect = 1.075e-30
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  E+ + EI LWF
Sbjct:  111 RNIIHGSDSLESAEREINLWF 131

BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAA3 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain USA300) GN=ndk PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2

Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111

HSP 2 Score: 29.6462 bits (65), Expect = 1.075e-30
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  E+ + EI LWF
Sbjct:  111 RNIIHGSDSLESAEREINLWF 131

BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAA2 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH1) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2

Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111

HSP 2 Score: 29.6462 bits (65), Expect = 1.075e-30
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  E+ + EI LWF
Sbjct:  111 RNIIHGSDSLESAEREINLWF 131

The following BLAST results are available for this feature:

BLAST of EY695515 vs. ExPASy Swiss-Prot

BLAST of EY695515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
NDK_STAAR	1.075e-30	53.15	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAAN	1.075e-30	53.15	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAAM	1.075e-30	53.15	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAAE	1.075e-30	53.15	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAAC	1.075e-30	53.15	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAAB	1.075e-30	53.15	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAA9	1.075e-30	53.15	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAA8	1.075e-30	53.15	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAA3	1.075e-30	53.15	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAA2	1.075e-30	53.15	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-700-037-C07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY695515 ID=EY695515; Name=EY695515; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGAGT
CTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGATCT
GCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAATTC
GCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTACAT
TCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTTCC
TCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACGCA
CTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAGAA
ATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAGAT
AGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAAGG
AAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAGTC
ATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAACT
CATTGGAGCCACAGATCCTCAGAGATCAGAACCTGGAACAATCAGAGGCG
ATCTAGCTGTTGTTGTTGGAAGAGAATCATTCATGGAAGTGATGGCCCCG
AGACCCGCAAGGATGAGATCACATTGTGGTTCACACCCGAGACTTGGTTA
ATACACAAGNCATGCAGAGAAGTGGGTCTATGAATCCACTGAGTACAATT
TTCTCTTACGTTTATAGAAACTTAGGNGCTACATGATAGTGCGATTAGAG
CATAACTGGTCCAAAAAATTTTGTTCTGTGAGATGAGTAAACACAACTTG
CTC