EY695515

Overview
NameEY695515
Unique NameEY695515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY695515_ssr57 microsatellite EY695515_ssr57:57..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAA1 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111          

HSP 2 Score: 29.6462 bits (65), Expect = 1.075e-30
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  E+ + EI LWF
Sbjct:  111 RNIIHGSDSLESAEREINLWF 131          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_UNCMA (Nucleoside diphosphate kinase OS=Uncultured methanogenic archaeon RC-I GN=ndk PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.898e-30
Identity = 68/150 (45.33%), Postives = 95/150 (63.33%), Query Frame = 2
Query:  338 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRESFMEVMAPRPARMR-SHCGSHPRLG*YTXHAEKWVYE 784
            E ERTF+ +KPDGVQRGL+ EIISRFER+G K+V +K++  S+E A++HY +   +PFF GL  F+ SGP +AMV EG+  ++  R ++G T P  S PGTIRGD A+ +GR       +P  A+   S       +  Y    E+W+YE
Sbjct:    3 ERERTFVMVKPDGVQRGLVGEIISRFERRGLKIVGMKMLEVSEELAKQHYAEHAAKPFFPGLVSFIRSGPTVAMVIEGKDAVSMVRSMLGKTKPIESAPGTIRGDFALDMGRNVIHASDSPESAKREISLYFKTSEIATYARIDEQWLYE 152          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAAW (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MW2) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.375e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111          

HSP 2 Score: 28.4906 bits (62), Expect = 2.375e-30
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  ++ + EI LWF
Sbjct:  111 RNIIHGSDSLDSAEREINLWF 131          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_STAAS (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MSSA476) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.375e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P  + PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111          

HSP 2 Score: 28.4906 bits (62), Expect = 2.375e-30
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + IIHGSD  ++ + EI LWF
Sbjct:  111 RNIIHGSDSLDSAEREINLWF 131          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_PELTS (Nucleoside diphosphate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ndk PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.479e-30
Identity = 67/149 (44.97%), Postives = 98/149 (65.77%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRESFMEVMAPRPA-RMRSHCGSHPRLG*YTXHAEKWVYE 784
            MERT++ IKPDGVQRGL+ EII+RFE++GFK+V +K++   +E A+KHY + K +PFF  L  +++S PV+AMV EG+  +   R+++GATDP ++ PGTIRG   + +GR       +P  A R  +   S   L  Y    ++WVYE
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIIARFEKRGFKIVGLKMIRIGRELAEKHYGEHKGKPFFEPLVGYITSSPVVAMVIEGKNAVGAAREMMGATDPLKAAPGTIRGTYGIDIGRNVIHGSDSPASAQREIALFFSADELMEYGLELDRWVYE 149          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_DESAP (Nucleoside diphosphate kinase OS=Desulforudis audaxviator (strain MP104C) GN=ndk PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.027e-30
Identity = 58/111 (52.25%), Postives = 85/111 (76.58%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            M+RTF+ +KPDGVQRGL+ E+I+RFER+GFKLVA+K++   +  A++HY + + +PFF+ L  +++SGPV AMV EG  V+T  R+++GAT P ++ PGTIRG   + VGR
Sbjct:    1 MDRTFVMVKPDGVQRGLVGEVITRFERRGFKLVALKLLWIDRGLAERHYEEHRGKPFFDELVRYITSGPVAAMVLEGREVVTTVREMMGATQPAKALPGTIRGTYGIDVGR 111          

HSP 2 Score: 22.3274 bits (46), Expect = 4.027e-30
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + I+HGSD   +   EI L+F
Sbjct:  111 RNIVHGSDSAASAAREIGLFF 131          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_METHJ (Nucleoside diphosphate kinase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=ndk PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.027e-30
Identity = 56/110 (50.91%), Postives = 78/110 (70.91%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVG 670
            MERTF+ +KPDGVQRGLI E+I+RFER+GFK+VA +          +HY +  ++PFF GL  +++SGP   MVWEG+ ++   R +IGAT+P  + PGTIRGD A+ +G
Sbjct:    1 MERTFLMVKPDGVQRGLIGEVITRFERRGFKMVASRFEKLPDARVMEHYAEHVQKPFFPGLKAYITSGPCFLMVWEGKDIVKISRDMIGATNPAGAAPGTIRGDYALEIG 110          

HSP 2 Score: 28.4906 bits (62), Expect = 4.027e-30
Identity = 12/22 (54.55%), Postives = 14/22 (63.64%), Query Frame = 1
Query:  676 IIHGSDGPETRKDEITLWFTPE 741
            +IHGSD  ET   EI + F PE
Sbjct:  113 VIHGSDSVETANREIAIHFKPE 134          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_PYRFU (Nucleoside diphosphate kinase OS=Pyrococcus furiosus GN=ndk PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.234e-30
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 2
Query:  338 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVG 670
            E+ERT + IKPD V RGLI EIISRFE+KG K+V +K++   +E A+KHY + K +PFF  L ++++  PV+ MV EG   +   RK+ GATDP+ + PGTIRGD  + +G
Sbjct:    3 EVERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHKGKPFFEALIDYITKAPVVVMVVEGRYAVEVVRKMAGATDPKDAAPGTIRGDYGLDIG 113          

HSP 2 Score: 29.261 bits (64), Expect = 5.234e-30
Identity = 13/31 (41.94%), Postives = 21/31 (67.74%), Query Frame = 1
Query:  676 IIHGSDGPETRKDEITLWFTPETWLIHKXCR 768
            +IH SD  E+ + EI+L+F PE   I++ C+
Sbjct:  119 VIHASDSKESAEREISLYFKPEE--IYEYCK 147          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDKM_MOUSE (Nucleoside diphosphate kinase, mitochondrial OS=Mus musculus GN=Nme4 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 6.796e-30
Identity = 56/110 (50.91%), Postives = 77/110 (70.00%), Query Frame = 2
Query:  344 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            ERT +A+KPDGVQR L+  +I RFER+GFKLV +K++   +    +HY DL+ +PF+  L  ++SSGPV+AMVWEG  V+   R +IG TD   + PGTIRGD +V + R
Sbjct:   37 ERTLVAVKPDGVQRRLVGTVIQRFERRGFKLVGMKMLQAPESILAEHYRDLQRKPFYPALISYMSSGPVVAMVWEGPNVVHISRAMIGHTDSTEAAPGTIRGDFSVHISR 146          

HSP 2 Score: 24.6386 bits (52), Expect = 6.796e-30
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + +IH SD  +  + EI LWF
Sbjct:  146 RNVIHASDSVDGAQREIELWF 166          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDKM_HUMAN (Nucleoside diphosphate kinase, mitochondrial OS=Homo sapiens GN=NME4 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.850e-30
Identity = 55/110 (50.00%), Postives = 77/110 (70.00%), Query Frame = 2
Query:  344 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            ERT +A+KPDGVQR L+ ++I RFER+GF LV +K++   +    +HY DL+ +PF+  L  ++SSGPV+AMVWEG  V+   R +IG TD   + PGTIRGD +V + R
Sbjct:   38 ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISR 147          

HSP 2 Score: 25.7942 bits (55), Expect = 8.850e-30
Identity = 10/21 (47.62%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + +IH SD  E  + EI LWF
Sbjct:  147 RNVIHASDSVEGAQREIQLWF 167          
The following BLAST results are available for this feature:
BLAST of EY695515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STAA11.075e-3053.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_UNCMA1.898e-3045.33Nucleoside diphosphate kinase OS=Uncultured methan... [more]
NDK_STAAW2.375e-3053.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAS2.375e-3053.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_PELTS2.479e-3044.97Nucleoside diphosphate kinase OS=Pelotomaculum the... [more]
NDK_DESAP4.027e-3052.25Nucleoside diphosphate kinase OS=Desulforudis auda... [more]
NDK_METHJ4.027e-3050.91Nucleoside diphosphate kinase OS=Methanospirillum ... [more]
NDK_PYRFU5.234e-3050.45Nucleoside diphosphate kinase OS=Pyrococcus furios... [more]
NDKM_MOUSE6.796e-3050.91Nucleoside diphosphate kinase, mitochondrial OS=Mu... [more]
NDKM_HUMAN8.850e-3050.00Nucleoside diphosphate kinase, mitochondrial OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-037-C07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY695515 ID=EY695515; Name=EY695515; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGAGT
CTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGATCT
GCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAATTC
GCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTACAT
TCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTTCC
TCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACGCA
CTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAGAA
ATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAGAT
AGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAAGG
AAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAGTC
ATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAACT
CATTGGAGCCACAGATCCTCAGAGATCAGAACCTGGAACAATCAGAGGCG
ATCTAGCTGTTGTTGTTGGAAGAGAATCATTCATGGAAGTGATGGCCCCG
AGACCCGCAAGGATGAGATCACATTGTGGTTCACACCCGAGACTTGGTTA
ATACACAAGNCATGCAGAGAAGTGGGTCTATGAATCCACTGAGTACAATT
TTCTCTTACGTTTATAGAAACTTAGGNGCTACATGATAGTGCGATTAGAG
CATAACTGGTCCAAAAAATTTTGTTCTGTGAGATGAGTAAACACAACTTG
CTC
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