EY695515

Overview
NameEY695515
Unique NameEY695515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY695515_ssr57 microsatellite EY695515_ssr57:57..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_NATPD (Nucleoside diphosphate kinase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=ndk PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.230e-29
Identity = 69/153 (45.10%), Postives = 93/153 (60.78%), Query Frame = 2
Query:  335 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRESFMEVMAPRPARMRSHCG---SHPRLG*YTXHAEKWVYE 784
            A+ ERTF+ +KPDGVQRGLI +I+SRFE +G KLVA K +    E A++HY +  ++PFF+ L EF++SGPV AMVWEG+  +   R ++G TDP  S PGTIRGD  + +GR + +      P       G       L  Y    E W+YE
Sbjct:    2 ADTERTFVMVKPDGVQRGLIGDIVSRFEDRGLKLVAGKFMQIDDELAREHYAEHVDKPFFDELKEFITSGPVFAMVWEGQDAVAQVRTMMGETDPAESAPGTIRGDFGLDLGR-NVIHGSDTEPGSAEREIGLFFDDDELQDYERIDEPWLYE 153          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_PYRAB (Nucleoside diphosphate kinase OS=Pyrococcus abyssi GN=ndk PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.505e-29
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 2
Query:  338 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVV 667
            E ERT + IKPD V RGLI EIISRFE++G K+V +K++  SKE A+KHY + +E+PFF  L E+++  PV+ MV EG   I   RK+ GATDP+ +EPGTIRGD A+ V
Sbjct:    5 EKERTLVIIKPDAVIRGLIGEIISRFEKRGLKIVGMKMIWISKELAEKHYAEHREKPFFKSLVEYITRTPVVVMVVEGRCAIEVVRKMAGATDPKNAEPGTIRGDFALEV 114          

HSP 2 Score: 22.7126 bits (47), Expect = 1.505e-29
Identity = 8/19 (42.11%), Postives = 13/19 (68.42%), Query Frame = 1
Query:  676 IIHGSDGPETRKDEITLWF 732
            ++H SD  E+ + EI L+F
Sbjct:  121 VVHASDSKESAEREIKLYF 139          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_SCHPO (Nucleoside diphosphate kinase OS=Schizosaccharomyces pombe GN=ndk1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.607e-29
Identity = 66/148 (44.59%), Postives = 93/148 (62.84%), Query Frame = 2
Query:  344 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRESFMEVMAPRPARMRSHCGSHP-RLG*YTXHAEKWVYE 784
            E+TFIA+KPD VQRGLI  IIS+FE KG+KL A+K +VPS++  ++HY + K +PF+  L  F++SGPV AM+WEG+  +  GR ++GA++P  S PGTIRGD  + +GR       +   A         P  +  Y    E W+YE
Sbjct:    4 EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLVGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIESANREIKLWFQPSEIQVYDRTIEPWIYE 151          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_HALMA (Nucleoside diphosphate kinase OS=Haloarcula marismortui GN=ndk PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.607e-29
Identity = 59/113 (52.21%), Postives = 83/113 (73.45%), Query Frame = 2
Query:  335 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            +E ERTF+ +KPDGVQRGLI +I+SRFE +G K+V  K +   +E A++HY + +++PFF+GL +F++SGPV AMVWEG+      R ++G TDP  S PGTIRGD  + +GR
Sbjct:    2 SEHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKPFFDGLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESAPGTIRGDYGLDLGR 114          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_PYRHO (Nucleoside diphosphate kinase OS=Pyrococcus horikoshii GN=ndk PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.961e-29
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 2
Query:  335 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVV 667
            +E ERT + IKPD V RGLI EIISRFE+KG K+V +K++   +E A+KHY + +E+PFF  L ++++  PV+ MV EG   +   RK+ GATDP+ + PGTIRGD  + V
Sbjct:    2 SETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEV 112          

HSP 2 Score: 27.7202 bits (60), Expect = 1.961e-29
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 1
Query:  676 IIHGSDGPETRKDEITLWFTPE 741
            +IH SD  E+ + EI+L+F PE
Sbjct:  119 VIHASDSKESAEREISLFFKPE 140          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_ENCCU (Nucleoside diphosphate kinase OS=Encephalitozoon cuniculi GN=NDK1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.557e-29
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTFI IKPD ++R LIS II RFE KG  L A K V+P +E  + HY  L   PFF+ + E + SG V+AMVW G+  ++ GRKLIG T+PQ +  GTIRGD  V  G+
Sbjct:    1 MERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGK 111          

HSP 2 Score: 27.335 bits (59), Expect = 2.557e-29
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLW 729
            K IIHGSD  E  + EI LW
Sbjct:  111 KNIIHGSDCVENAEKEIKLW 130          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_EXIS2 (Nucleoside diphosphate kinase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.334e-29
Identity = 58/106 (54.72%), Postives = 77/106 (72.64%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            ME+TF+ +KPDGV+RGLI EII+R ERKGF +  +K++  ++E AQ HY +  E+PFF  L  FL+SGPV+A+  EGE V+T  R +IG T P  + PGTIRGD A
Sbjct:    1 MEQTFLMVKPDGVERGLIGEIIARIERKGFVIREMKMMQVTEELAQAHYAEHAEKPFFGELVTFLTSGPVVALRVEGEDVVTVSRMMIGKTKPTEALPGTIRGDFA 106          

HSP 2 Score: 27.7202 bits (60), Expect = 3.334e-29
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + +IHGSD  E+ + E+ LWF
Sbjct:  111 ENVIHGSDSVESAERELGLWF 131          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_DEIGD (Nucleoside diphosphate kinase OS=Deinococcus geothermalis (strain DSM 11300) GN=ndk PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.342e-29
Identity = 55/110 (50.00%), Postives = 80/110 (72.73%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVG 670
            MERTF  IKPDGV+RGL  EI++R ++KG+++V +K ++ S+E A++HY + +ERPFF  L +F++SGPV+A+  EGE  I   R ++GAT+P  + PGTIR D A   G
Sbjct:    1 MERTFAMIKPDGVRRGLTPEILARIQKKGYRVVGLKQMLISRELAERHYAEHRERPFFGELVDFITSGPVVAIALEGENAIAGWRAMMGATNPANAAPGTIRADFATTTG 110          

HSP 2 Score: 26.1794 bits (56), Expect = 4.342e-29
Identity = 10/27 (37.04%), Postives = 17/27 (62.96%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWFTPETWL 750
            + + HGSD PE+   E++L+F  +  L
Sbjct:  111 ENVTHGSDSPESAARELSLFFREDELL 137          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_MOOTA (Nucleoside diphosphate kinase OS=Moorella thermoacetica (strain ATCC 39073) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.342e-29
Identity = 54/107 (50.47%), Postives = 81/107 (75.70%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAV 661
            +ERTF  IKP+GV+RGL+  I++R E+KG+++VA+K++  + E A  HY + +++PF+  L   ++SGPV+AMV EG GVI   R+L+GAT+PQ + PGTIRGD A+
Sbjct:    3 VERTFSMIKPEGVRRGLVGAILARLEQKGYRIVALKMLRLTPEMAAAHYAEHRDKPFYQDLINHITSGPVVAMVLEGPGVIAGLRRLMGATNPQEAAPGTIRGDFAL 109          

HSP 2 Score: 30.0314 bits (66), Expect = 4.342e-29
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 1
Query:  676 IIHGSDGPETRKDEITLWFTP 738
            +IHG+D P + + EI L+FTP
Sbjct:  115 VIHGADSPASAEREIALYFTP 135          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_COREF (Nucleoside diphosphate kinase OS=Corynebacterium efficiens GN=ndk PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 9.589e-29
Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 2
Query:  344 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDP-QRSEPGTIRGDLAVVVG 670
            ERT I IKPDGV  G + EII+R ERKG KL A+ + V  +E A+KHY +  ++PFF  L EF++S P+IA + EGE  I   R+L G TDP  ++ PGTIRGD A+ VG
Sbjct:    3 ERTLILIKPDGVTNGHVGEIIARIERKGLKLAALDLRVADRETAEKHYEEHADKPFFGELVEFITSAPLIAGIVEGERAIDAWRQLAGGTDPVSKATPGTIRGDFALTVG 112          

HSP 2 Score: 31.9574 bits (71), Expect = 9.589e-29
Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + ++HGSD PE+ + EI++WF
Sbjct:  113 ENVVHGSDSPESAEREISIWF 133          
The following BLAST results are available for this feature:
BLAST of EY695515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_NATPD1.230e-2945.10Nucleoside diphosphate kinase OS=Natronomonas phar... [more]
NDK_PYRAB1.505e-2955.45Nucleoside diphosphate kinase OS=Pyrococcus abyssi... [more]
NDK_SCHPO1.607e-2944.59Nucleoside diphosphate kinase OS=Schizosaccharomyc... [more]
NDK_HALMA1.607e-2952.21Nucleoside diphosphate kinase OS=Haloarcula marism... [more]
NDK_PYRHO1.961e-2950.45Nucleoside diphosphate kinase OS=Pyrococcus horiko... [more]
NDK_ENCCU2.557e-2953.15Nucleoside diphosphate kinase OS=Encephalitozoon c... [more]
NDK_EXIS23.334e-2954.72Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]
NDK_DEIGD4.342e-2950.00Nucleoside diphosphate kinase OS=Deinococcus geoth... [more]
NDK_MOOTA4.342e-2950.47Nucleoside diphosphate kinase OS=Moorella thermoac... [more]
NDK_COREF9.589e-2952.73Nucleoside diphosphate kinase OS=Corynebacterium e... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-037-C07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY695515 ID=EY695515; Name=EY695515; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGAGT
CTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGATCT
GCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAATTC
GCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTACAT
TCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTTCC
TCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACGCA
CTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAGAA
ATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAGAT
AGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAAGG
AAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAGTC
ATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAACT
CATTGGAGCCACAGATCCTCAGAGATCAGAACCTGGAACAATCAGAGGCG
ATCTAGCTGTTGTTGTTGGAAGAGAATCATTCATGGAAGTGATGGCCCCG
AGACCCGCAAGGATGAGATCACATTGTGGTTCACACCCGAGACTTGGTTA
ATACACAAGNCATGCAGAGAAGTGGGTCTATGAATCCACTGAGTACAATT
TTCTCTTACGTTTATAGAAACTTAGGNGCTACATGATAGTGCGATTAGAG
CATAACTGGTCCAAAAAATTTTGTTCTGTGAGATGAGTAAACACAACTTG
CTC
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