EY695515

Overview
NameEY695515
Unique NameEY695515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY695515_ssr57 microsatellite EY695515_ssr57:57..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK1_SACOF (Nucleoside diphosphate kinase 1 OS=Saccharum officinarum GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.459e-41
Identity = 75/111 (67.57%), Postives = 90/111 (81.08%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            ME TFI IKPDGVQRGLI EIISRFE+KGF L A+K+V   + FA+KHY DL  +PFF GL +++ SGPV+AMVWEG+ V+T GRK+IGAT+P  SEPGTIRGD AV +GR
Sbjct:    1 MESTFIMIKPDGVQRGLIGEIISRFEKKGFYLKALKLVNVERSFAEKHYADLSSKPFFQGLVDYIISGPVVAMVWEGKSVVTTGRKIIGATNPLVSEPGTIRGDFAVDIGR 111          

HSP 2 Score: 29.261 bits (64), Expect = 8.459e-41
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + +IHGSD  E+   EI LWF
Sbjct:  111 RNVIHGSDSIESANKEIALWF 131          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK1_SOYBN (Nucleoside diphosphate kinase 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.102e-40
Identity = 71/110 (64.55%), Postives = 91/110 (82.73%), Query Frame = 2
Query:  344 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            E+TFI IKPDGVQRGLI EIISRFE+KGF L  +K+V   + FA+KHY DL  +PFF+GL +++ SGPV+AM+WEG+ V+T GRK+IGAT+P +SEPGTIRGD A+ +GR
Sbjct:    3 EQTFIMIKPDGVQRGLIGEIISRFEKKGFYLKGLKLVTVDRPFAEKHYADLSAKPFFSGLVDYIISGPVVAMIWEGKNVVTTGRKIIGATNPAQSEPGTIRGDFAIDIGR 112          

HSP 2 Score: 29.6462 bits (65), Expect = 1.102e-40
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + +IHGSD  E+   EI LWF
Sbjct:  112 RNVIHGSDAVESANKEIALWF 132          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_THEEB (Nucleoside diphosphate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.438e-40
Identity = 71/111 (63.96%), Postives = 90/111 (81.08%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTF+AIKPDGVQRGL+  II RFE+KG+ LV +K++  S+E A++HY + K++PFF GL  F++SGPV+AMVWEG GVI   RKLIGAT+P  +EPGT+RGD AV VGR
Sbjct:    1 MERTFLAIKPDGVQRGLVGTIIQRFEQKGYTLVGLKLMRVSRELAEQHYGEHKDKPFFPGLVNFITSGPVVAMVWEGRGVIANARKLIGATNPLNAEPGTLRGDFAVDVGR 111          

HSP 2 Score: 32.7278 bits (73), Expect = 2.438e-40
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + +IHGSD PE  + EI LWF
Sbjct:  111 RNVIHGSDSPENAEREINLWF 131          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_SYNS3 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9311) GN=ndk PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.642e-40
Identity = 84/148 (56.76%), Postives = 104/148 (70.27%), Query Frame = 2
Query:  344 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRESFMEVMAPRPARMRSHCGSHP-RLG*YTXHAEKWVYE 784
            ER+FIAIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+E A++HY   KERPFF GL +F++SGPV+AMVWEG+GVIT  RK+IGAT P  +EPGTIRGDLA+ +GR       AP  A        +P  L  +T   + W  E
Sbjct:    4 ERSFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFGGLVDFITSGPVVAMVWEGDGVITSARKMIGATKPLEAEPGTIRGDLAINIGRNVIHGSDAPETAEFEIGLWFNPSELSDWTPSDQTWRVE 151          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_SYNY3 (Nucleoside diphosphate kinase OS=Synechocystis sp. (strain PCC 6803) GN=ndk PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.177e-40
Identity = 69/111 (62.16%), Postives = 87/111 (78.38%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            MERTFI IKPDGVQR LI EI+ RFE+KGFKLVA+K++  S+E A+KHY  L ++PFF+GL  F+ S PV+AMVWEG  +++  R++IGATDP  + PGTIRGD  V VGR
Sbjct:    1 MERTFIMIKPDGVQRQLIGEIVGRFEKKGFKLVAMKVMTVSQELAEKHYEALNDKPFFSGLVNFICSSPVVAMVWEGNSIVSTSRQMIGATDPHAAAPGTIRGDYGVSVGR 111          

HSP 2 Score: 34.2686 bits (77), Expect = 3.177e-40
Identity = 15/24 (62.50%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWFTPE 741
            + IIHGSD  ET K EI+LWF  E
Sbjct:  111 RNIIHGSDAIETAKREISLWFKDE 134          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_SYNPW (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH7803) GN=ndk PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.506e-40
Identity = 81/123 (65.85%), Postives = 96/123 (78.05%), Query Frame = 2
Query:  344 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRESFMEVMAPRPAR 712
            ERTFIAIKPDGVQRGLI EI+ RFERKGFKLV +K + PS+E A++HY   KERPFF GL +F++SGPV+AMVWEG+GVI   RKLIGAT P  +EPGTIRGDLA+ +GR       AP  A+
Sbjct:    4 ERTFIAIKPDGVQRGLIGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAINIGRNVIHGSDAPETAQ 126          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDKA2_XENLA (Nucleoside diphosphate kinase A2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.392e-40
Identity = 70/114 (61.40%), Postives = 92/114 (80.70%), Query Frame = 2
Query:  332 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            AA  ERTFIAIKPDGVQRGL+ +II RFE+KGF+LVA+K +  S++  ++HY DLK+RPF+ GL E+++SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGDL + VGR
Sbjct:    2 AANKERTFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFLQASQDLLRQHYIDLKDRPFYPGLVEYMNSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDLCIQVGR 115          

HSP 2 Score: 33.8834 bits (76), Expect = 5.392e-40
Identity = 14/32 (43.75%), Postives = 19/32 (59.38%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWFTPETWLIHKXC 765
            + IIHGSD  ++   EI LWF  E  + +K C
Sbjct:  115 RNIIHGSDSVDSANKEIALWFKDEELVEYKSC 146          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK1_PEA (Nucleoside diphosphate kinase 1 OS=Pisum sativum GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.394e-40
Identity = 70/110 (63.64%), Postives = 90/110 (81.82%), Query Frame = 2
Query:  344 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            E+TFI IKPDGVQRGL+ EIISRFE+KGF L  +K V   + FA+KHY DL  +PFF+GL +++ SGPV+AM+WEG+ V+T GRK+IGAT+P +SEPGTIRGD A+ +GR
Sbjct:    3 EQTFIMIKPDGVQRGLVGEIISRFEKKGFYLKGLKFVNVERAFAEKHYADLSAKPFFSGLVDYIISGPVVAMIWEGKNVVTTGRKIIGATNPAQSEPGTIRGDFAIDIGR 112          

HSP 2 Score: 29.6462 bits (65), Expect = 5.394e-40
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWF 732
            + +IHGSD  E+   EI LWF
Sbjct:  112 RNVIHGSDAVESANKEIALWF 132          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDKA1_XENLA (Nucleoside diphosphate kinase A1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 9.153e-40
Identity = 70/114 (61.40%), Postives = 90/114 (78.95%), Query Frame = 2
Query:  332 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGR 673
            AA  ERTFIAIKPDGVQRGL+ +II RFE+KGF+LVA+K    S++  ++HY DLK+RPF+ GL E++SSGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 AANKERTFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFQQASQDLLRQHYIDLKDRPFYPGLVEYMSSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 115          

HSP 2 Score: 34.6538 bits (78), Expect = 9.153e-40
Identity = 15/32 (46.88%), Postives = 19/32 (59.38%), Query Frame = 1
Query:  670 KRIIHGSDGPETRKDEITLWFTPETWLIHKXC 765
            + IIHGSD  E+   EI LWF  E  + +K C
Sbjct:  115 RNIIHGSDSVESANKEIALWFKDEELVENKSC 146          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.311e-39
Identity = 86/150 (57.33%), Postives = 104/150 (69.33%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRESFMEVMAPRPARMRSHCG-SHPRLG*YTXHAEKWVYES 787
            MERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K V PS++ A +HY   +ERPFF GL +F++SGPVIAMVWEG+GVI   RKLIGAT P  +EPGTIRGDLAV +GR        P  A+   +   S   L  +T   + W  ES
Sbjct:    3 MERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVIASARKLIGATKPLDAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSAEELNAWTPSDQSWRIES 152          
The following BLAST results are available for this feature:
BLAST of EY695515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK1_SACOF8.459e-4167.57Nucleoside diphosphate kinase 1 OS=Saccharum offic... [more]
NDK1_SOYBN1.102e-4064.55Nucleoside diphosphate kinase 1 OS=Glycine max PE=... [more]
NDK_THEEB2.438e-4063.96Nucleoside diphosphate kinase OS=Thermosynechococc... [more]
NDK_SYNS32.642e-4056.76Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNY33.177e-4062.16Nucleoside diphosphate kinase OS=Synechocystis sp.... [more]
NDK_SYNPW4.506e-4065.85Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDKA2_XENLA5.392e-4061.40Nucleoside diphosphate kinase A2 OS=Xenopus laevis... [more]
NDK1_PEA5.394e-4063.64Nucleoside diphosphate kinase 1 OS=Pisum sativum G... [more]
NDKA1_XENLA9.153e-4061.40Nucleoside diphosphate kinase A1 OS=Xenopus laevis... [more]
NDK_PROMM1.311e-3957.33Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-037-C07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY695515 ID=EY695515; Name=EY695515; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGAGT
CTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGATCT
GCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAATTC
GCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTACAT
TCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTTCC
TCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACGCA
CTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAGAA
ATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAGAT
AGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAAGG
AAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAGTC
ATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAACT
CATTGGAGCCACAGATCCTCAGAGATCAGAACCTGGAACAATCAGAGGCG
ATCTAGCTGTTGTTGTTGGAAGAGAATCATTCATGGAAGTGATGGCCCCG
AGACCCGCAAGGATGAGATCACATTGTGGTTCACACCCGAGACTTGGTTA
ATACACAAGNCATGCAGAGAAGTGGGTCTATGAATCCACTGAGTACAATT
TTCTCTTACGTTTATAGAAACTTAGGNGCTACATGATAGTGCGATTAGAG
CATAACTGGTCCAAAAAATTTTGTTCTGTGAGATGAGTAAACACAACTTG
CTC
back to top