EY695515

Overview
NameEY695515
Unique NameEY695515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY695515_ssr57 microsatellite EY695515_ssr57:57..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_VIBCM (Nucleoside diphosphate kinase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.814e-20
Identity = 48/107 (44.86%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAV 661
            +ERTF  IKPD V+R LI EI  R E+ G +++A K+V  S+E A   Y + + +PFF  L EF++SGP++  V EGE  I   R+L+G T+P+ +  GT+R D A+
Sbjct:    3 LERTFSIIKPDAVKRNLIGEIYHRIEKAGLQIIAAKMVHLSEEQASGFYAEHEGKPFFEPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAACGTLRADYAL 109          

HSP 2 Score: 22.3274 bits (46), Expect = 2.814e-20
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 1
Query:  679 IHGSDGPETRKDEITLWFTPET 744
            +HGSD P +   EI  +F PE+
Sbjct:  116 VHGSDSPASAAREIEFFF-PES 136          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_VIBCH (Nucleoside diphosphate kinase OS=Vibrio cholerae GN=ndk PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.814e-20
Identity = 48/107 (44.86%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAV 661
            +ERTF  IKPD V+R LI EI  R E+ G +++A K+V  S+E A   Y + + +PFF  L EF++SGP++  V EGE  I   R+L+G T+P+ +  GT+R D A+
Sbjct:    3 LERTFSIIKPDAVKRNLIGEIYHRIEKAGLQIIAAKMVHLSEEQASGFYAEHEGKPFFEPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAACGTLRADYAL 109          

HSP 2 Score: 22.3274 bits (46), Expect = 2.814e-20
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 1
Query:  679 IHGSDGPETRKDEITLWFTPET 744
            +HGSD P +   EI  +F PE+
Sbjct:  116 VHGSDSPASAAREIEFFF-PES 136          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_VIBC3 (Nucleoside diphosphate kinase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.814e-20
Identity = 48/107 (44.86%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAV 661
            +ERTF  IKPD V+R LI EI  R E+ G +++A K+V  S+E A   Y + + +PFF  L EF++SGP++  V EGE  I   R+L+G T+P+ +  GT+R D A+
Sbjct:    3 LERTFSIIKPDAVKRNLIGEIYHRIEKAGLQIIAAKMVHLSEEQASGFYAEHEGKPFFEPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAACGTLRADYAL 109          

HSP 2 Score: 22.3274 bits (46), Expect = 2.814e-20
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 1
Query:  679 IHGSDGPETRKDEITLWFTPET 744
            +HGSD P +   EI  +F PE+
Sbjct:  116 VHGSDSPASAAREIEFFF-PES 136          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_METSB (Nucleoside diphosphate kinase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=ndk PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.814e-20
Identity = 49/113 (43.36%), Postives = 68/113 (60.18%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRES 679
            +ERTF  IKPD  +R L   I +  E+ G +++A K V  ++  A+  Y   KERPFF  L + + SGPV+  V EGE  I   R ++GATDP ++ PGTIR + A+ VG  S
Sbjct:    3 IERTFSIIKPDATRRNLTGAINALIEKAGLRIIAQKRVQITRPQAETFYAVHKERPFFGALVDTMISGPVVVQVLEGENAIKAYRDVLGATDPAKAAPGTIRKEFALSVGENS 115          

HSP 2 Score: 25.0238 bits (53), Expect = 2.814e-20
Identity = 10/18 (55.56%), Postives = 11/18 (61.11%), Query Frame = 1
Query:  682 HGSDGPETRKDEITLWFT 735
            HGSD  ET   EI  WF+
Sbjct:  117 HGSDASETAAIEIAQWFS 134          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_RHOSU (Nucleoside diphosphate kinase OS=Rhodovulum sulfidophilum GN=ndk PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.814e-20
Identity = 47/113 (41.59%), Postives = 69/113 (61.06%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRES 679
            ++RTF  IKPD  +R L   I ++ E  G ++VA K +  SK  A   Y   KERPF++ LCEF++S P++  V EGE  I   R+++GAT+P  +  GTIR + A+ +G  S
Sbjct:    3 IQRTFSIIKPDATKRNLTGAINAKLEAAGLRIVAQKRIHLSKAQAAVFYAVHKERPFYDELCEFMASEPIVVQVLEGEDAIAKNREVMGATNPAEAAEGTIRKEFALSIGENS 115          

HSP 2 Score: 25.7942 bits (55), Expect = 2.814e-20
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  679 IHGSDGPETRKDEITLWFT 735
            +HGSD  +T K+EI  +F+
Sbjct:  116 VHGSDAEDTAKEEIAYFFS 134          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_SULDN (Nucleoside diphosphate kinase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.037e-20
Identity = 49/106 (46.23%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            MERT   IKPD V +G++ +I+ RFE  G K+ A + +  S+  A+  Y    ERPFF  L +F+ SGPV+  V EGEG +   R L+GAT+P+ +E GTIR D A
Sbjct:    1 MERTLSIIKPDAVAKGVVGKILDRFESNGLKIAATRKMQLSRADAEAFYAVHSERPFFGDLVDFMISGPVVVSVLEGEGALIKNRNLMGATNPKEAEAGTIRADFA 106          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_SHELP (Nucleoside diphosphate kinase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.037e-20
Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            +ERTF  IKPD V +  I  I +RFE  G K++A K+V  SKE A+  Y +  ERPFF  L EF++SGP++  V EGE  +   R+++GAT+P  +  GT+R D A
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIIASKMVHLSKEQAEGFYAEHSERPFFGALVEFMTSGPIMVQVLEGENAVLANREIMGATNPAEAARGTLRADFA 108          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_LEPIN (Nucleoside diphosphate kinase OS=Leptospira interrogans GN=ndk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.037e-20
Identity = 46/102 (45.10%), Postives = 69/102 (67.65%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIR 646
            M RTFI IKPDGV+   +  I+SR E++GFK++ +K +  S E A++ Y     RPF+N LC ++SSGP++A   E +  + + R++IGATDP+ +  GTIR
Sbjct:    1 MSRTFIMIKPDGVKNKHVGNILSRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIR 102          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_LEPIC (Nucleoside diphosphate kinase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ndk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.037e-20
Identity = 46/102 (45.10%), Postives = 69/102 (67.65%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIR 646
            M RTFI IKPDGV+   +  I+SR E++GFK++ +K +  S E A++ Y     RPF+N LC ++SSGP++A   E +  + + R++IGATDP+ +  GTIR
Sbjct:    1 MSRTFIMIKPDGVKNKHVGNILSRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIR 102          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_BURCM (Nucleoside diphosphate kinase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.037e-20
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            +ERT   IKPD V + +I +I SRFE  G K+VA ++   S+  A+K Y     RPFF  L +F+ SGPV+  V EGEG I   R L+GATDP+++E GTIR D A
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVASRMAHLSRGDAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAILKNRDLMGATDPKKAEKGTIRADFA 108          
The following BLAST results are available for this feature:
BLAST of EY695515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_VIBCM2.814e-2044.86Nucleoside diphosphate kinase OS=Vibrio cholerae s... [more]
NDK_VIBCH2.814e-2044.86Nucleoside diphosphate kinase OS=Vibrio cholerae G... [more]
NDK_VIBC32.814e-2044.86Nucleoside diphosphate kinase OS=Vibrio cholerae s... [more]
NDK_METSB2.814e-2043.36Nucleoside diphosphate kinase OS=Methylocella silv... [more]
NDK_RHOSU2.814e-2041.59Nucleoside diphosphate kinase OS=Rhodovulum sulfid... [more]
NDK_SULDN3.037e-2046.23Nucleoside diphosphate kinase OS=Sulfurimonas deni... [more]
NDK_SHELP3.037e-2046.23Nucleoside diphosphate kinase OS=Shewanella loihic... [more]
NDK_LEPIN3.037e-2045.10Nucleoside diphosphate kinase OS=Leptospira interr... [more]
NDK_LEPIC3.037e-2045.10Nucleoside diphosphate kinase OS=Leptospira interr... [more]
NDK_BURCM3.037e-2049.06Nucleoside diphosphate kinase OS=Burkholderia ambi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-037-C07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY695515 ID=EY695515; Name=EY695515; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGAGT
CTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGATCT
GCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAATTC
GCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTACAT
TCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTTCC
TCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACGCA
CTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAGAA
ATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAGAT
AGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAAGG
AAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAGTC
ATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAACT
CATTGGAGCCACAGATCCTCAGAGATCAGAACCTGGAACAATCAGAGGCG
ATCTAGCTGTTGTTGTTGGAAGAGAATCATTCATGGAAGTGATGGCCCCG
AGACCCGCAAGGATGAGATCACATTGTGGTTCACACCCGAGACTTGGTTA
ATACACAAGNCATGCAGAGAAGTGGGTCTATGAATCCACTGAGTACAATT
TTCTCTTACGTTTATAGAAACTTAGGNGCTACATGATAGTGCGATTAGAG
CATAACTGGTCCAAAAAATTTTGTTCTGTGAGATGAGTAAACACAACTTG
CTC
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