EY695515

Overview
NameEY695515
Unique NameEY695515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY695515_ssr57 microsatellite EY695515_ssr57:57..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_BURA4 (Nucleoside diphosphate kinase OS=Burkholderia ambifaria (strain MC40-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.037e-20
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            +ERT   IKPD V + +I +I SRFE  G K+VA ++   S+  A+K Y     RPFF  L +F+ SGPV+  V EGEG I   R L+GATDP+++E GTIR D A
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVASRMAHLSRGDAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAILKNRDLMGATDPKKAEKGTIRADFA 108          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_YERPY (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            +ERTF  IKP+ V    I  I +RFE  GFK++A K++  +KE A+  Y + K RPFF+GL EF++SGP+I  V EGE  +   R ++GAT+P  +  GT+R D A
Sbjct:    3 LERTFSIIKPNAVANNNIGAIYARFESAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIIVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFA 108          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_YERPS (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            +ERTF  IKP+ V    I  I +RFE  GFK++A K++  +KE A+  Y + K RPFF+GL EF++SGP+I  V EGE  +   R ++GAT+P  +  GT+R D A
Sbjct:    3 LERTFSIIKPNAVANNNIGAIYARFESAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIIVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFA 108          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_XYLFT (Nucleoside diphosphate kinase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            +ERT   IKPD V + +I +I SRFE+ G K+VA K    S+  A+  Y   ++RPFFN L EF+ SGPV+  V E E  +   R+L+GAT+P+ + PGTIR D A
Sbjct:    3 LERTLSIIKPDAVAKNVIGDIYSRFEKAGLKIVAAKYKQLSRREAEGFYAVHRDRPFFNALVEFMISGPVMIQVLESENAVARHRELLGATNPKDAAPGTIRADFA 108          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_XYLFM (Nucleoside diphosphate kinase OS=Xylella fastidiosa (strain M12) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            +ERT   IKPD V + +I +I SRFE+ G K+VA K    S+  A+  Y   ++RPFFN L EF+ SGPV+  V E E  +   R+L+GAT+P+ + PGTIR D A
Sbjct:    3 LERTLSIIKPDAVAKNVIGDIYSRFEKAGLKIVAAKYKQLSRREAEGFYAVHRDRPFFNALVEFMISGPVMIQVLESENAVARHRELLGATNPKDAAPGTIRADFA 108          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_XYLF2 (Nucleoside diphosphate kinase OS=Xylella fastidiosa (strain M23) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            +ERT   IKPD V + +I +I SRFE+ G K+VA K    S+  A+  Y   ++RPFFN L EF+ SGPV+  V E E  +   R+L+GAT+P+ + PGTIR D A
Sbjct:    3 LERTLSIIKPDAVAKNVIGDIYSRFEKAGLKIVAAKYKQLSRREAEGFYAVHRDRPFFNALVEFMISGPVMIQVLESENAVARHRELLGATNPKDAAPGTIRADFA 108          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_RALME (Nucleoside diphosphate kinase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20
Identity = 54/123 (43.90%), Postives = 73/123 (59.35%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRESFMEVMAPRPA 709
            +ERT   IKPD V + +I +I +RFE  G K+VA K+V  S+  A++ Y   K RPFF  L +F+ SGPV+    EGE  I   R L+GATDP+++E GTIR D A  +   +     AP  A
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYARFEAAGLKVVAAKMVHLSRGEAEQFYAVHKARPFFKDLVDFMVSGPVMIQALEGESAIAKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETA 125          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_PHOPR (Nucleoside diphosphate kinase OS=Photobacterium profundum GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20
Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAV 661
            +E+TF  IKPD V+R LI  I  RFE  G K+VA K+V      AQ  Y + +E+PFFN L EF++SGPV+  V EGE  I   R+L+G T+P+ +  GTIR D A+
Sbjct:    3 IEKTFSIIKPDAVKRNLIGAIYQRFENAGLKIVASKMVHLDATKAQGFYAEHEEKPFFNELVEFMTSGPVMVQVLEGEDAIHRYRELMGTTNPENAACGTIRSDFAL 109          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_IDILO (Nucleoside diphosphate kinase OS=Idiomarina loihiensis GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20
Identity = 49/109 (44.95%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVV 667
            +ERT   IKPD V + LI  I +RFE  G ++V  K++  SKE A+  Y + KERPFF  L EF++SGP++  V EGE  +   R ++GAT+P  +  GTIR D A  +
Sbjct:    3 LERTLSIIKPDAVAKNLIGAIYNRFESAGLRIVGAKMMHLSKEQAEGFYAEHKERPFFGALVEFMTSGPIVVQVLEGEDAVRKNRDIMGATNPAEALAGTIRADYAETI 111          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_BDEBA (Nucleoside diphosphate kinase OS=Bdellovibrio bacteriovorus GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20
Identity = 48/123 (39.02%), Postives = 75/123 (60.98%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRESFMEVMAPRPA 709
            +E+TF  IKP+ +++  I +I+S FE  G K+ A KI V +   A++ Y + K RPFF  L  F++SGPV+ M  +GEG +   R+++GATDP+++ PGT+R      VG  +     +P  A
Sbjct:    3 IEQTFSIIKPNAMKKNAIGDIVSMFEANGLKIAAAKITVLTTAKAEEFYAEHKARPFFGELVSFMTSGPVMLMCLQGEGAVLKNREIMGATDPKKANPGTVRAKFGDNVGENAVHGSDSPESA 125          
The following BLAST results are available for this feature:
BLAST of EY695515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BURA43.037e-2049.06Nucleoside diphosphate kinase OS=Burkholderia ambi... [more]
NDK_YERPY3.966e-2046.23Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]
NDK_YERPS3.966e-2046.23Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]
NDK_XYLFT3.966e-2047.17Nucleoside diphosphate kinase OS=Xylella fastidios... [more]
NDK_XYLFM3.966e-2047.17Nucleoside diphosphate kinase OS=Xylella fastidios... [more]
NDK_XYLF23.966e-2047.17Nucleoside diphosphate kinase OS=Xylella fastidios... [more]
NDK_RALME3.966e-2043.90Nucleoside diphosphate kinase OS=Ralstonia metalli... [more]
NDK_PHOPR3.966e-2048.60Nucleoside diphosphate kinase OS=Photobacterium pr... [more]
NDK_IDILO3.966e-2044.95Nucleoside diphosphate kinase OS=Idiomarina loihie... [more]
NDK_BDEBA3.966e-2039.02Nucleoside diphosphate kinase OS=Bdellovibrio bact... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-037-C07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY695515 ID=EY695515; Name=EY695515; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGAGT
CTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGATCT
GCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAATTC
GCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTACAT
TCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTTCC
TCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACGCA
CTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAGAA
ATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAGAT
AGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAAGG
AAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAGTC
ATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAACT
CATTGGAGCCACAGATCCTCAGAGATCAGAACCTGGAACAATCAGAGGCG
ATCTAGCTGTTGTTGTTGGAAGAGAATCATTCATGGAAGTGATGGCCCCG
AGACCCGCAAGGATGAGATCACATTGTGGTTCACACCCGAGACTTGGTTA
ATACACAAGNCATGCAGAGAAGTGGGTCTATGAATCCACTGAGTACAATT
TTCTCTTACGTTTATAGAAACTTAGGNGCTACATGATAGTGCGATTAGAG
CATAACTGGTCCAAAAAATTTTGTTCTGTGAGATGAGTAAACACAACTTG
CTC
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