EY695515

Overview
NameEY695515
Unique NameEY695515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY695515_ssr57 microsatellite EY695515_ssr57:57..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_NEIMB (Nucleoside diphosphate kinase OS=Neisseria meningitidis serogroup B GN=ndk PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.154e-19
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVV 667
            +ERT   IKPD V + +I +I SRFE  G K+VA K+   + + AQ+ Y   K+RPF+ GL EF++ GPV+  V EGE  +   R+L+GAT+P  +  GTIR D A  V
Sbjct:    3 IERTISIIKPDAVGKNVIGKIYSRFEENGLKIVAAKMKQLTLKEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPSEAAEGTIRADFATSV 111          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_NEIMA (Nucleoside diphosphate kinase OS=Neisseria meningitidis serogroup A GN=ndk PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.154e-19
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVV 667
            +ERT   IKPD V + +I +I SRFE  G K+VA K+   + + AQ+ Y   K+RPF+ GL EF++ GPV+  V EGE  +   R+L+GAT+P  +  GTIR D A  V
Sbjct:    3 IERTISIIKPDAVGKNVIGKIYSRFEENGLKIVAAKMKQLTLKEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPSEAAEGTIRADFATSV 111          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_ERWT9 (Nucleoside diphosphate kinase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ndk PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.154e-19
Identity = 48/106 (45.28%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            +ERTF  +KP+ V + +I  I SRFE  GFK+V  K++  SKE A+  Y + + +PFF+GL EF++SGPV+  V EG+  +   R L+GAT+P  +  GT+R D A
Sbjct:    3 IERTFSIVKPNAVAKNVIGAIFSRFESAGFKIVGSKMLHLSKEQAEGFYAEHQGKPFFDGLVEFMTSGPVVVSVLEGDNAVQRHRDLMGATNPANALAGTLRADYA 108          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_CHRVO (Nucleoside diphosphate kinase OS=Chromobacterium violaceum GN=ndk PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.154e-19
Identity = 49/106 (46.23%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            +ERT   +KPD V + +I +I  RFE  G K+VA K+   S+  A+  Y   KERPFF  L +F+ SGPV+    EGE  +   R+L+GATDP+++E GTIR D A
Sbjct:    3 IERTLSIVKPDAVAKNVIGKIYDRFESAGLKIVAAKMKQLSRAEAEGFYAVHKERPFFKDLVDFMVSGPVMIQALEGENAVLKNRELMGATDPKKAEAGTIRADFA 108          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_NOVAD (Nucleoside diphosphate kinase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=ndk PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.363e-19
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  347 RTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            RTF  IKPD  +R L   +    E  G ++VA K +  S+E A+  Y   KERPFF  L EF+ SGPV+  V EGE  +   R ++GAT+P+ + PGTIR +LA
Sbjct:    5 RTFSIIKPDATRRNLTGAVTKMLEEAGLRVVASKRIHMSREQAEGFYAVHKERPFFGELVEFMISGPVVVQVLEGEDAVKRNRDIMGATNPKDAAPGTIRKELA 108          

HSP 2 Score: 24.6386 bits (52), Expect = 1.363e-19
Identity = 10/21 (47.62%), Postives = 12/21 (57.14%), Query Frame = 1
Query:  679 IHGSDGPETRKDEITLWFTPE 741
            +HGSD  E    EI  +F PE
Sbjct:  116 VHGSDSEENAAIEIAYFFKPE 136          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_SPHWW (Nucleoside diphosphate kinase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=ndk PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.363e-19
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  344 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            ERTF  IKPD  +R L   I ++ E  G ++VA K +  +KE A+  Y   +ERPFF  L  F+ SGPV+  V EGE  +   R+++GAT+P  ++ GTIR   A
Sbjct:    4 ERTFSIIKPDATRRNLTGAITAKLEEAGLRVVASKRIHMTKEQAEGFYGVHRERPFFGDLVSFMISGPVVVQVLEGENAVARNREVMGATNPANADEGTIRKTFA 108          

HSP 2 Score: 26.9498 bits (58), Expect = 1.363e-19
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  679 IHGSDGPETRKDEITLWFTPE 741
            +HGSD  E  K EI  +F PE
Sbjct:  116 VHGSDSAENAKIEIDFFFKPE 136          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_SHEAM (Nucleoside diphosphate kinase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=ndk PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.507e-19
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVV 667
            +ERTF  IKPD V +  I  I +RFE  G K++A K+V  +KE A+  Y +  ERPFF  L  F++SGP++  V EGE  +   R+++GAT+P ++  GT+R D A  +
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFESAGLKIIAAKMVHLTKEQAEGFYAEHSERPFFGALVSFMTSGPIMVQVLEGENAVLANREIMGATNPAQAARGTLRADYAASI 111          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_PSEPW (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain W619) GN=ndk PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.507e-19
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLA 658
            ++RTF  IKPD V + +I +I +RFE  G K+VA KI   SK  A+  Y +  ER FF  L  F++SGPV+  V EGE  I   R+L+GAT+P+ +  GTIR D A
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKITTRFEEAGLKIVASKIKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFA 108          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_NEIG2 (Nucleoside diphosphate kinase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=ndk PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.507e-19
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVV 667
            +ERT   IKPD V + +I +I SRFE  G K+VA K+   + + AQ+ Y   K+RPF+ GL EF++ GPV+  V EGE  +   R+L+GAT+P  +  GTIR D A  V
Sbjct:    3 IERTISIIKPDAVGKNVIGKIYSRFEENGLKIVAAKMKQLTLKEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPTEAAEGTIRADFATSV 111          
BLAST of EY695515 vs. ExPASy Swiss-Prot
Match: NDK_MESSB (Nucleoside diphosphate kinase OS=Mesorhizobium sp. (strain BNC1) GN=ndk PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.507e-19
Identity = 54/123 (43.90%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  341 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQRSEPGTIRGDLAVVVGRESFMEVMAPRPA 709
            +ERTF  IKPD  +R L   I    E  G K+VA K V  S+  A+  Y   K+RPFF+ LCEF+SSGP +  V EGE  I   R+++GAT+P  +  GTIR   A+ +G  S     AP  A
Sbjct:    3 IERTFSMIKPDATKRNLTGAITKMLEDAGLKVVASKRVWMSRRQAEGFYAVHKDRPFFDELCEFMSSGPTVIQVLEGENAIAKNREVMGATNPANAAEGTIRKVFALSIGENSVHGSDAPETA 125          
The following BLAST results are available for this feature:
BLAST of EY695515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_NEIMB1.154e-1945.87Nucleoside diphosphate kinase OS=Neisseria meningi... [more]
NDK_NEIMA1.154e-1945.87Nucleoside diphosphate kinase OS=Neisseria meningi... [more]
NDK_ERWT91.154e-1945.28Nucleoside diphosphate kinase OS=Erwinia tasmanien... [more]
NDK_CHRVO1.154e-1946.23Nucleoside diphosphate kinase OS=Chromobacterium v... [more]
NDK_NOVAD1.363e-1945.19Nucleoside diphosphate kinase OS=Novosphingobium a... [more]
NDK_SPHWW1.363e-1942.86Nucleoside diphosphate kinase OS=Sphingomonas witt... [more]
NDK_SHEAM1.507e-1943.12Nucleoside diphosphate kinase OS=Shewanella amazon... [more]
NDK_PSEPW1.507e-1947.17Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_NEIG21.507e-1945.87Nucleoside diphosphate kinase OS=Neisseria gonorrh... [more]
NDK_MESSB1.507e-1943.90Nucleoside diphosphate kinase OS=Mesorhizobium sp.... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-037-C07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY695515 ID=EY695515; Name=EY695515; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGAGT
CTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGATCT
GCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAATTC
GCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTACAT
TCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTTCC
TCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACGCA
CTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAGAA
ATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAGAT
AGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAAGG
AAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAGTC
ATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAACT
CATTGGAGCCACAGATCCTCAGAGATCAGAACCTGGAACAATCAGAGGCG
ATCTAGCTGTTGTTGTTGGAAGAGAATCATTCATGGAAGTGATGGCCCCG
AGACCCGCAAGGATGAGATCACATTGTGGTTCACACCCGAGACTTGGTTA
ATACACAAGNCATGCAGAGAAGTGGGTCTATGAATCCACTGAGTACAATT
TTCTCTTACGTTTATAGAAACTTAGGNGCTACATGATAGTGCGATTAGAG
CATAACTGGTCCAAAAAATTTTGTTCTGTGAGATGAGTAAACACAACTTG
CTC
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