EY693222

Overview
NameEY693222
Unique NameEY693222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY693222 vs. ExPASy Swiss-Prot
Match: PNO1_CAEEL (RNA-binding protein pno-1 OS=Caenorhabditis elegans GN=pno-1 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.469e-52
Identity = 99/177 (55.93%), Postives = 138/177 (77.97%), Query Frame = 1 
Query:  193 RKVNVPPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVK-TLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILXSPAGKVYSKLKAVTARLAER 720
            R V VP HRY+PLK  W+ I+TPI + + + +R NLK R+VE++   D  D ++LQK  DFV AF+LGF+V DAIAL+RLD L++E+FE+ DVK +L+G+H+SRAIGR++GK G+TK  IEN TKTRIV+A++KIHILG++ N+K+AR+++CSLIL S   KVY  L+ + +R AER
Sbjct:  100 RVVPVPKHRYTPLKDNWVNIFTPIVKNLGLQVRFNLKKRQVEIRNPVDREDTTDLQKATDFVRAFILGFEVNDAIALIRLDHLFLETFEVADVKHSLKGDHVSRAIGRIAGKDGRTKLVIENTTKTRIVVANTKIHILGAYQNLKLARNAVCSLILGSNPSKVYGSLRNMASRGAER 276
The following BLAST results are available for this feature:
BLAST of EY693222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PNO1_CAEEL2.469e-5255.93RNA-binding protein pno-1 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-009-C06-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693222 ID=EY693222; Name=EY693222; organism=Citrus sinensis; type=EST; length=947bp
CCACGCGTCCGGACATAGACATCACGGAGAGAAGACAGCTCGTATCTGAT
CTTGTGGTTGTTCACAATGCAGTCTTCCATGGACGTTGAAACAGTTCCAT
CTCAACTGCAAAATGAATCCGGGTCTCTGCCACCAAAGCCCCTGTTTGAG
CCATTGAAGGCTCATGAAATGTCTGATGGTCGAGTTCAGTTTCGGAAGGT
CAATGTTCCACCTCATCGGTACTCGCCTCTCAAGAAAATATGGATGGAAA
TCTACACTCCAATTTATGAACAGATGAAGATTGACATCCGTATGAACCTC
AAGGCTCGTAGGGTTGAATTGAAGACTAGAGCAGACACACCAGACATAAG
TAATTTACAGAAGTGTGCGGATTTTGTTCATGCATTCATGCTTGGTTTTG
ATGTTATCGATGCCATTGCACTTTTGCGTTTGGATGAGCTGTATATAGAA
TCTTTTGAGATCAAGGATGTTAAGACACTAAGAGGTGAGCATTTGTCACG
TGCCATAGGAAGACTATCTGGTAAAGGTGGCAAAACAAAGTTTGCTATCG
AGAATGCCACAAAAACAAGGATTGTGATTGCAGATTCGAAAATTCACATA
CTAGGATCTTTTGCCAATATTAAAATTGCAAGGGATTCCCTTTGTAGTCT
CATCTTANGATCTCCTGCTGGAAAGGTGTATTCGAAACTTAAAGCAGTGA
CTGCCAGATTGGCAGAAAGGTTTTGATCATTCTTATTTTTTTGTATGCAT
GCAAGGTTTCTCTATGGTGAGTATATCTAGGAGAGTGTAACCTGGTAGNT
AGGGATTTTGTCGTCCGAGTATCAACCAGGTACATTAAAAATAGTAGGAT
TATCATTATAAGTTTTTATAAATTTGNATGGTNGAAATTGGTTCGGAATC
AATACTTTTCGGGCTGGGGGATCACTTTTTCCATGTCAACACTCTTT
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