EY693221

Overview
NameEY693221
Unique NameEY693221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PROMA (Translation initiation factor IF-3 OS=Prochlorococcus marinus GN=infC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 66/178 (37.08%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPPTEGSEHRRGKKNKCR 837
            I+   +R++DA    +GI+ + EA+ +A+D ELDLV+VS  ADPPV R+M+Y K+++E           S  ++ ++KE+KM Y ID+HDY VR+  A +FLK GDKVK  V  +GR  +  N+A  L+ R   D+ E A  +    R+ RN+ +F   +  P    E    + +K +
Sbjct:   23 IKYPKLRVVDADGTQLGIISREEALDVAQDRELDLVLVSEKADPPVCRIMNYGKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDEHDYQVRIGQATRFLKAGDKVKCTVIFRGREIQHTNLAESLLARMAKDLEEPAEVQQAPKREGRNMIMFLTPRKTPLIKKEQELEEASKAK 198          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PROM3 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9303) GN=infC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 66/165 (40.00%), Postives = 99/165 (60.00%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPP 792
            D I    +R++DA    +G++ + EA+ +A+D ELDLV+VS  ADPPV R+MDY K+++E           S  ++ ++KE+KM Y IDQHDY+VR+  A +FLK GDKVK  V  +GR  +   +A  L+RR   D+ E A  +    R+ RN+ +F   +  P
Sbjct:   21 DRINYPKLRVVDADGTQLGVINREEALDVAKDRELDLVLVSEKADPPVCRIMDYGKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYNVRIGQAVRFLKAGDKVKCTVIFRGREIQHTALAETLLRRMAKDLEEQAEIQQAPKREGRNMIMFLTPRKTP 183          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_SYNPW (Translation initiation factor IF-3 OS=Synechococcus sp. (strain WH7803) GN=infC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 63/158 (39.87%), Postives = 98/158 (62.03%), Query Frame = 1
Query:  322 VRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPP 792
            +R++DA    +G++ + +A+++A++ ELDLV+VS  ADPPV R+MDY KY++E           S  ++ ++KE+KM Y IDQHDY VR+  A++FLK GDKVK  V  +GR  +   +A  L+RR   D+ E A  +    R+ RN+ +F   +  P
Sbjct:   28 LRVVDADGTQLGVIDREKALEVAQERELDLVLVSEKADPPVCRIMDYGKYKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAETLLRRMAKDLEEPAEIQQPPKREGRNMIMFLTPRKTP 183          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_SYNS3 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9311) GN=infC PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.829e-25
Identity = 64/165 (38.79%), Postives = 99/165 (60.00%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPP 792
            D I    +R++DA    +G++ + +A+++A + ELDLV+VS  ADPPV R+MDY K+++E           S  ++ ++KE+KM Y IDQHDY VR+  A++FLK GDKVK  V  +GR  +   +A  L+RR   D+ E A  +    R+ RN+ +F   +  P
Sbjct:   21 DRINYPQLRVVDADGEQLGVIDREQALEVARERELDLVLVSEKADPPVCRIMDYGKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAEVLLRRMAKDLEEPAEVQQPPKREGRNMIMFLTPRKAP 183          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PROM9 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9312) GN=infC PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.829e-25
Identity = 63/156 (40.38%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF 771
            I+   +R++D+    +G++ + EA+++A   ELDLV+VS  A+PPV RVMDY KY++E           S  ++ ++KE+KM Y ID+HDY VR+  A KFLK GDKVK  V  +GR  +  N+A  L+ +  ND+ E +  + K  R+ RN+ +F
Sbjct:   23 IKYPQLRVVDSDGKQLGVIDRLEALEIASQRELDLVLVSEKANPPVCRVMDYGKYKFEQEKKAKEARKKS--HQTEVKEVKMRYKIDKHDYDVRIGQATKFLKSGDKVKCTVFFRGREIQHSNLAETLLLKMANDLEEQSEIQQKPKREGRNMIMF 176          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PROM0 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9301) GN=infC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 62/156 (39.74%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF 771
            I+   +R++D+    +G++ + +A+++A   ELDLV+VS  A+PPV R+MDY KY++E           S  ++ ++KE+KM Y ID+HDY VR+  A KFLK GDKVK  V  +GR  +  N+A  L+ R  ND+ E +  + K  R+ RN+ +F
Sbjct:   23 IKYPQLRVVDSDGKQLGVIDRLKALEIASQRELDLVLVSEKANPPVCRIMDYGKYKFEQEKKAKEARKKS--HQTEVKEVKMRYKIDKHDYDVRIGQATKFLKSGDKVKCTVIFRGREIQHSNLAETLLLRMANDLEEQSEVQQKPKREGRNMIMF 176          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PROMS (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain AS9601) GN=infC PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.230e-25
Identity = 61/156 (39.10%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF 771
            I+   +R++D+    +G++ + +A+++A   ELDLV+VS  A+PPV R+MDY KY++E           S  ++ ++KE+KM Y ID+HDY VR+  A KFLK GDKVK  V  +GR  +  N+A  L+ +  ND+ E +  + K  R+ RN+ +F
Sbjct:   23 IKYPQLRVVDSDGKQLGVIDRLKALEIASQRELDLVLVSEKANPPVCRIMDYGKYKFEQEKKAKEARKKS--HQTEVKEVKMRYKIDKHDYDVRIGQATKFLKSGDKVKCTVIFRGREIQHSNLAETLLLKMANDLEEQSEVQQKPKREGRNMIMF 176          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PROM4 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9211) GN=infC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.075e-24
Identity = 62/165 (37.58%), Postives = 99/165 (60.00%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPP 792
            D I+   +R++DA    +G++ +  A+++A++ ELDLV+VS  A+PPV R+M+Y K+++E           S  ++ ++KE+KM Y IDQHDY VR+  A +FLK GDKVK  V  +GR  +  N+A  L+ R   D+ E A  +    R+ RN+ +F   +  P
Sbjct:   21 DRIKYPQLRVVDADGTQLGVINREAALEVAQERELDLVLVSEKANPPVCRIMNYGKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYEVRINQATRFLKAGDKVKCTVIFRGREIQHTNLAESLLARMAKDLEEQAEVQQTPKREGRNMIMFLTPRKTP 183          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_ACAM1 (Translation initiation factor IF-3 OS=Acaryochloris marina (strain MBIC 11017) GN=infC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.075e-24
Identity = 64/175 (36.57%), Postives = 102/175 (58.29%), Query Frame = 1
Query:  250 RRRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF 771
            R +Q + ++ E        IR   +R++DA    +GI+  SEA+++A++  LDLV+VS  ADPPV RVMDY K+++E              +  D+KE+KM Y I  HDY VR+  A++FLK GDKVK  V  +GR  +  ++A  L+++  ND+ + A  +    R+ RN+ ++
Sbjct:    7 RNQQNQPNINER-------IRFPKIRVVDADGTQLGIMAPSEAMEIADERNLDLVLVSDKADPPVCRVMDYGKFKFE--QEKKAREAKKKQHTSDVKEVKMRYKIQTHDYEVRVNHAKRFLKSGDKVKATVTFRGREIQHSHLAEALLKKMANDLLDFAEIQQAPKREGRNMIMY 172          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_THEEB (Translation initiation factor IF-3 OS=Thermosynechococcus elongatus (strain BP-1) GN=infC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 63/169 (37.28%), Postives = 98/169 (57.99%), Query Frame = 1
Query:  268 KDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIF 771
            K  ++EQ    + I    VR++D   + +GI+   EAI +A + ELDLV+VS  ADPPV +++DY K+R+E              +  D+KE+KM Y I++HDY+V +  A +FLK GDKVK  V  +GR  +  ++A EL+ R  ND+  +A  ++      RN+ +F
Sbjct:   11 KKTQQEQPMINERIHFPRVRVVDTDGSQLGIMSSQEAIAIAREKELDLVLVSDKADPPVCKIIDYGKFRFE--QEKKAREARKKQHTSDVKEVKMRYKIEEHDYNVCINRAERFLKAGDKVKATVTFRGREIQHSHLAEELLNRMANDLQAVAEVQQAPKQEGRNMIMF 177          
The following BLAST results are available for this feature:
BLAST of EY693221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 297
Match NameE-valueIdentityDescription
IF3_PROMA1.270e-2537.08Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_PROM31.270e-2540.00Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_SYNPW1.658e-2539.87Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_SYNS32.829e-2538.79Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_PROM92.829e-2540.38Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_PROM03.694e-2539.74Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_PROMS8.230e-2539.10Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_PROM41.075e-2437.58Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_ACAM11.075e-2436.57Translation initiation factor IF-3 OS=Acaryochlori... [more]
IF3_THEEB1.404e-2437.28Translation initiation factor IF-3 OS=Thermosynech... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-009-C05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693221 ID=EY693221; Name=EY693221; organism=Citrus sinensis; type=EST; length=848bp
CCACGCGTCCGCCAACTCCCTTCTCCCTTGAAAACACCACTATGGCTGGT
CTCGCCAGCGCCTTTCACTTTTCTAAAACGACACCGTCGCTCTCTTCAAT
CGAGTCCAAGTTCTTCGGCCTCCATTTGTGTAACCTCAACCATTTCTTCC
TCATTTCTTTCTCGCCTTCTTCCCATCACCACAACGTTTCCATCACCGCC
AGATACGGCGNGCGGTGGCGGGCCCCGCTTCGCAGGCTCCGACTACTCCC
GCCGCCGCCAAAAGGAAAAAGATTTGGAAGAAGAGCAAGCCTTTGATATC
GATGGCATCAGGTCGAACACTGTGAGGCTTATTGATGCTCAGCAAAACAT
GGTTGGTATAGTTCCTAAGAGTGAAGCTATTCAAATGGCCGAGGATGCTG
AACTAGACCTGGTGATAGTTTCCCCAGATGCAGATCCTCCAGTTGTCAGA
GTAATGGATTACAATAAATATAGATATGAACAGCAAAAGAAGAAGAAAGG
GCAGCAGAAGAAAAGTGCAGCCAATCGGATGGATTTGAAGGAGCTTAAAA
TGGGTTATAATATTGACCAGCATGATTATTCTGTGCGTCTAAAAGCTGCA
AGGAAGTTTCTGAAAGACGGAGACAAGGTTAAGGTCATAGTGAACCCTCA
AGGGCGGGGAAATGAATTCAGAAATATTGCTATTGAGCTAATACGACGNT
TCCAGAATGATGTTGGGGAGCTTGCTAGTGAGGAGAACAAAAATTTCAGA
GATAGGAATATATTTATATTTTAGGTTCAAAAAGGCCCTCCTACAGAGGG
CTCAGAACACCGNAGAGGAAAGAAAAACAAGTGTAGAGGAAGCTCACT
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