EY693221

Overview
NameEY693221
Unique NameEY693221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_NEIMA (Translation initiation factor IF-3 OS=Neisseria meningitidis serogroup A GN=infC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20
Identity = 53/156 (33.97%), Postives = 88/156 (56.41%), Query Frame = 1
Query:  274 LEEEQAFDIDG-IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEEN 738
            + +E+   I+G I +  VRLI      +G+V   EA+ MAE  ++DLV +SP A PPV ++MDY KY+Y+               ++ +KE+K     D+ DY ++++   +FL DGDKVKV +  +GR    + +  +L+ R + D+ E+A  E+
Sbjct:    2 IAQEREARINGEITAKEVRLISESGEQLGVVSVREALAMAEGQDVDLVEISPTAKPPVCKLMDYGKYKYQQAKKRDEAKKNQ--KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTLRFRGREMAHQQLGAQLLERVKEDLAEVAQIES 155          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_NEIG1 (Translation initiation factor IF-3 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=infC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20
Identity = 53/156 (33.97%), Postives = 88/156 (56.41%), Query Frame = 1
Query:  274 LEEEQAFDIDG-IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEEN 738
            + +E+   I+G I +  VRLI      +G+V   EA+ MAE  ++DLV +SP A PPV ++MDY KY+Y+               ++ +KE+K     D+ DY ++++   +FL DGDKVKV +  +GR    + +  +L+ R + D+ E+A  E+
Sbjct:    2 IAQEREARINGEITAKEVRLISESGEQLGVVSVREALAMAEGQDVDLVEISPTAKPPVCKLMDYGKYKYQQAKKRDEAKKNQ--KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTLRFRGREMAHQQLGAQLLERVKEDLAEVAQIES 155          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_AZOC5 (Translation initiation factor IF-3 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=infC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20
Identity = 48/143 (33.57%), Postives = 87/143 (60.84%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEE 735
            IR   V+LID      G++P  +A+ +A++A LDLV +SP++ PPV +++D+ +++Y+                +++KE+K+   ID HDY V++KA  +F ++GDKVKV +  +GR    ++I  +L+++ + DV  +A  E
Sbjct:   17 IRIREVQLIDQDGQNRGVLPTRDALLLAQEAGLDLVEISPNSSPPVCKILDFGRFKYQNQKKASEARKKQKV--VEVKEIKLRPGIDTHDYDVKMKAMLRFFEEGDKVKVTLRFRGREMAHQDIGYKLLQKLKEDVTNIAKVE 157          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_BACTN (Translation initiation factor IF-3 OS=Bacteroides thetaiotaomicron GN=infC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20
Identity = 54/140 (38.57%), Postives = 84/140 (60.00%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELA 726
            IR+  VR++   +    + P  +A++MAE+ ELDLV +SP+A PPV R++DY+K+ Y+               ++++KE++ G   D HDY+ +LK AR FL+DGDKVK  V  +GR   F+     L+ RF ND+ + A
Sbjct:   16 IRAKEVRIV-GDEIEPKVYPIFQALKMAEEKELDLVEISPNAQPPVCRIIDYSKFLYQLKKRQKEQKAKQV--KVNVKEIRFGPQTDDHDYNFKLKHARGFLEDGDKVKAYVFFKGRSILFKEQGEVLLLRFANDLEDFA 152          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PSEE4 (Translation initiation factor IF-3 OS=Pseudomonas entomophila (strain L48) GN=infC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 51/145 (35.17%), Postives = 84/145 (57.93%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEE 735
            + I +  VRLI A    +GIV   EA+++A++A+LDLV +S DA PPV +VMDY K+ +E               ++ +KE+K     ++ DY V+L+   +FL DGDK K+ +  +GR    + + +EL++R + D+ E  + E
Sbjct:   21 ENISAREVRLIGADGEQIGIVSIDEALRIADEAKLDLVEISADAQPPVCKVMDYGKHLFEKKKQANEAKKNQ--KQIQIKEIKFRPGTEEGDYQVKLRNLVRFLSDGDKAKISLRFRGREMAHQELGMELLKRVETDLAEYGTVE 163          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_METRJ (Translation initiation factor IF-3 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=infC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 49/149 (32.89%), Postives = 90/149 (60.40%), Query Frame = 1
Query:  295 DIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENK 741
            DI G+R   V+LID      G+VP  +A+ +AE+  LDLV ++P++ PPV +++DY ++R+                 +++KE+K+   ID+HDY  ++K+  +F ++GDKVKV +  +GR    ++I + L+ R +++  E+A  E++
Sbjct:   14 DIRGVRE--VQLIDDTGQNRGVVPFFDALNLAEEVGLDLVEIAPNSVPPVCKLLDYGRFRFNEQKKQNEARKRQKT--VEVKEIKLRPGIDKHDYDTKMKSVHRFFEEGDKVKVTLRFRGREMAHQDIGLRLLERVKSETAEIAKVESE 158          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_BARHE (Translation initiation factor IF-3 OS=Bartonella henselae GN=infC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 50/145 (34.48%), Postives = 87/145 (60.00%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENK 741
            IR   V+LI+ +    G+V   EA+ MA +  LDLV + P+A+PPV +++D  K +Y+                +++KE+KM  N+D HDY V+LKA  +F+ +GDKVK+ +  +GR    +++ ++L++R + D  E+A  E++
Sbjct:   15 IRVPRVQLINDEGQHQGVVTIQEALAMAAEVGLDLVEIVPNAEPPVCKIIDLGKLKYQTQKKAAETRKKQKV--IEIKEIKMRPNVDVHDYGVKLKAIHRFIGNGDKVKITLRFRGREMAHQDLGLKLLQRVKEDTSEIAKIESE 157          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_XANAC (Translation initiation factor IF-3 OS=Xanthomonas axonopodis pv. citri GN=infC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 49/138 (35.51%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGE 720
            IR   VR+I +   MVG++ + EA+  AE+  LDLV + P ADPPV ++MD+ K+++E               ++++KELK     D+ DY ++L+  R+FL++GDKVKV +  +GR    + +  E+  R + D+G+
Sbjct:   22 IRVPRVRVIGSDGEMVGVLSRDEALAKAEEEGLDLVEIQPQADPPVCKIMDFGKFKFE--QQKKANEAKKKTKQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQELGREMAARIEADLGD 157          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_STRCO (Translation initiation factor IF-3 OS=Streptomyces coelicolor GN=infC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 56/157 (35.67%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFI 768
            D IR   VRL+      VGIVP ++A+++A++ +LDLV V+ +A PPV ++MDY K++YE            A     +KE+K+   ID HDY  +     +FLK GDKVK+ +  +GR      +   L++R   DV +L   E+   +D RN+ +
Sbjct:    9 DRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAANARPPVCKLMDYGKFKYESAMKAREARKNQA--HTVIKEMKLRPKIDPHDYDTKKGHVVRFLKQGDKVKITIMFRGREQSRPELGYRLLQRLAEDVADLGFVESNPKQDGRNMIM 163          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_BART1 (Translation initiation factor IF-3 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=infC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 53/151 (35.10%), Postives = 88/151 (58.28%), Query Frame = 1
Query:  301 DGIRSNT------VRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEE 735
            DG RSN       V+LI+ +    G+V   EA+ MA +A LDLV + P+A+PPV +++D  K +Y+                +++KE+K+  N+D HDY V+LKA  +F+  GDKVK+ +  +GR    +++ ++L++R + D  E+A  E
Sbjct:    7 DGPRSNQDIRVPHVQLINDEGQHQGVVSIQEALAMAAEAGLDLVEIVPNAEPPVCKIIDLGKLKYQTQKKAAETRKKQKV--IEIKEIKVRPNVDVHDYGVKLKAIHRFIDHGDKVKITLRFRGREMAHQDLGLKLLQRVKEDTSEIAKIE 155          
The following BLAST results are available for this feature:
BLAST of EY693221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 297
Match NameE-valueIdentityDescription
IF3_NEIMA6.104e-2033.97Translation initiation factor IF-3 OS=Neisseria me... [more]
IF3_NEIG16.104e-2033.97Translation initiation factor IF-3 OS=Neisseria go... [more]
IF3_AZOC56.104e-2033.57Translation initiation factor IF-3 OS=Azorhizobium... [more]
IF3_BACTN7.971e-2038.57Translation initiation factor IF-3 OS=Bacteroides ... [more]
IF3_PSEE41.041e-1935.17Translation initiation factor IF-3 OS=Pseudomonas ... [more]
IF3_METRJ1.041e-1932.89Translation initiation factor IF-3 OS=Methylobacte... [more]
IF3_BARHE1.041e-1934.48Translation initiation factor IF-3 OS=Bartonella h... [more]
IF3_XANAC1.360e-1935.51Translation initiation factor IF-3 OS=Xanthomonas ... [more]
IF3_STRCO1.360e-1935.67Translation initiation factor IF-3 OS=Streptomyces... [more]
IF3_BART11.360e-1935.10Translation initiation factor IF-3 OS=Bartonella t... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-009-C05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693221 ID=EY693221; Name=EY693221; organism=Citrus sinensis; type=EST; length=848bp
CCACGCGTCCGCCAACTCCCTTCTCCCTTGAAAACACCACTATGGCTGGT
CTCGCCAGCGCCTTTCACTTTTCTAAAACGACACCGTCGCTCTCTTCAAT
CGAGTCCAAGTTCTTCGGCCTCCATTTGTGTAACCTCAACCATTTCTTCC
TCATTTCTTTCTCGCCTTCTTCCCATCACCACAACGTTTCCATCACCGCC
AGATACGGCGNGCGGTGGCGGGCCCCGCTTCGCAGGCTCCGACTACTCCC
GCCGCCGCCAAAAGGAAAAAGATTTGGAAGAAGAGCAAGCCTTTGATATC
GATGGCATCAGGTCGAACACTGTGAGGCTTATTGATGCTCAGCAAAACAT
GGTTGGTATAGTTCCTAAGAGTGAAGCTATTCAAATGGCCGAGGATGCTG
AACTAGACCTGGTGATAGTTTCCCCAGATGCAGATCCTCCAGTTGTCAGA
GTAATGGATTACAATAAATATAGATATGAACAGCAAAAGAAGAAGAAAGG
GCAGCAGAAGAAAAGTGCAGCCAATCGGATGGATTTGAAGGAGCTTAAAA
TGGGTTATAATATTGACCAGCATGATTATTCTGTGCGTCTAAAAGCTGCA
AGGAAGTTTCTGAAAGACGGAGACAAGGTTAAGGTCATAGTGAACCCTCA
AGGGCGGGGAAATGAATTCAGAAATATTGCTATTGAGCTAATACGACGNT
TCCAGAATGATGTTGGGGAGCTTGCTAGTGAGGAGAACAAAAATTTCAGA
GATAGGAATATATTTATATTTTAGGTTCAAAAAGGCCCTCCTACAGAGGG
CTCAGAACACCGNAGAGGAAAGAAAAACAAGTGTAGAGGAAGCTCACT
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