EY693221

Overview
NameEY693221
Unique NameEY693221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_SYNS9 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9902) GN=infC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 62/165 (37.58%), Postives = 100/165 (60.61%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPP 792
            D I    +R++D+  + +G++ + EA++++++ ELDLV+VS  ADPPV R+MDY K+++E           S  ++ ++KE+KM Y ID HDY VR+  A++FLK GDKVK  V  +GR  +   +A  L+RR   D+ E A  +    R+ RN+ +F   +  P
Sbjct:   21 DRISYPQLRVVDSDGSQLGVISREEALEVSKERELDLVLVSEKADPPVCRIMDYGKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDSHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAEVLLRRMAKDLEEKAEIQQSPKREGRNMIMFLTPRKTP 183          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_SYNP2 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=infC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 63/173 (36.42%), Postives = 103/173 (59.54%), Query Frame = 1
Query:  253 RRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFI 768
            +R+ ++DL +      + IR   +R+I      +GI+  +EA+ +AE+ +LDLV+VS  A PPV R+MDY KY++E              +  DLKE+KM Y I++HDY VR+ +A++FLK GDKVK  +  +GR  +  N+A +L+ R   D+ E+   + +  R+ RN+ +
Sbjct:    4 KRRVKRDLPKIN----ERIRFPNIRVISGDGEQLGIMTPAEALAIAEEEDLDLVLVSETAKPPVCRIMDYGKYKFEQEKRAREAKKKQ--HNADLKEVKMRYKIEEHDYQVRVNSAQRFLKSGDKVKATITFRGREIQHSNLAQKLLDRMAKDLEEVGEIQQRPKREGRNMMM 170          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_THETN (Translation initiation factor IF-3 OS=Thermoanaerobacter tengcongensis GN=infC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 61/155 (39.35%), Postives = 94/155 (60.65%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFI 768
            IR   VRLID     +GI+   EA ++A++  LDLV + P+A+PPV ++MD+ KYRYE                +++KE++M  NI+ HD+ V+LK+A KFLKDGDKVKV +  +GR     ++A +L++RF  ++ E  + E     D RN+ +
Sbjct:   21 IRDKEVRLIDQDGKQIGIMSAKEAYKIAQERHLDLVKIVPNANPPVCKLMDFGKYRYELSKREKEAKKKQKI--INVKEIRMSPNIEDHDFGVKLKSAIKFLKDGDKVKVTIRFRGREAAHTSLAEDLLKRFAEELREYGNVEKAPSMDGRNMMM 173          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_SILPO (Translation initiation factor IF-3 OS=Silicibacter pomeroyi GN=infC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 60/146 (41.10%), Postives = 89/146 (60.96%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEEN 738
            D IR++ +RLI A    VG+V  ++A+ MAE+A LDLV +SP+A PPV ++MD+ KY+YE                +++KE+K   N D HDY V+++   KFL++GDKVKV +  +GR    +N+  EL+ R   DV E+   EN
Sbjct:   20 DKIRASEIRLIGADGENVGVVHPAKAMAMAEEAGLDLVEISPNATPPVCKIMDFGKYKYEQQKRESEARKKQKI--IEVKEVKFRPNTDTHDYEVKMRNVYKFLENGDKVKVTLRFRGREMAHQNLGRELLERVAEDVKEMGKIEN 163          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PROM2 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9215) GN=infC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 60/156 (38.46%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF 771
            I+   +R++D+    +G++ + +A+++A   ELDLV+VS  A+PPV R+MDY KY++E           S  ++ ++KE+KM Y ID+HDY VR+  A KFLK GDKVK  V  +GR  +  N+A  L+ +  +D+ E +  + K  R+ RN+ +F
Sbjct:   23 IKYPQLRVVDSDGKQLGVIDRLKALEIANQRELDLVLVSEKANPPVCRIMDYGKYKFEQEKKAKEARKKS--HQTEVKEVKMRYKIDKHDYDVRIGQATKFLKSGDKVKCTVIFRGREIQHSNLAETLLLKMASDLEEQSEVQQKPKREGRNMIMF 176          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PROM1 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain NATL1A) GN=infC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.085e-24
Identity = 60/163 (36.81%), Postives = 99/163 (60.74%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPP 792
            I  +++R++D+    +G++ + EA+++A++ ELDLV+VS  A PPV R+M+Y K+++E           S  ++ ++KE+KM Y IDQHDY VR+  A +FLK GDKVK  V  +GR  +   +A  L++R   D+ E A  +    R+ RN+ +F   +  P
Sbjct:   23 ISYSSLRVVDSDGTQLGVISREEALEVAKERELDLVLVSEKATPPVCRIMNYGKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDKVKCTVIFRGREIQHTALAETLLKRMSKDLEEKAEVQQSPKREGRNMIMFLTPRKTP 183          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3C_PORYE (Translation initiation factor IF-3, chloroplastic OS=Porphyra yezoensis GN=infC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.085e-24
Identity = 63/176 (35.80%), Postives = 98/176 (55.68%), Query Frame = 1
Query:  244 YSRRRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFI 768
            Y   ++  +DL +      D IR   VR+ID +   +GI    EAIQ+A    LDLV+VS  +DPPV R++DY KY++               +   +KE+KM Y I++HDY VR+  A KF++ GDKVK  +  +GR  +  N+AI+L+ +  +D+  +A  +    RD RN+ +
Sbjct:    5 YKNSKKLSRDLPQIN----DRIRFPKVRVIDDEGEQLGIFVPEEAIQLAVQQGLDLVVVSDKSDPPVCRILDYGKYKFTQEKRAREAKKKQ--HNSSIKEVKMRYKIEEHDYKVRINQASKFIQAGDKVKATITFRGREIQHSNLAIDLLNKMASDLNAIAEIQQAPSRDGRNVIM 174          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_SYNR3 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain RCC307) GN=infC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.335e-24
Identity = 66/179 (36.87%), Postives = 102/179 (56.98%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF------*VQKGPPTEGSEHRR 816
            D I    +R++DA    +G++ + EA+ +A + ELDLV+VS  ADPPV R+MDY K+++E           S  ++ ++KE+KM Y ID HDY VR+  A +FLK GDKVK  V  +GR  +   +A +L+ R   D+ E A  +    R+ RN+ +F       +QK  P + ++  R
Sbjct:   21 DRINYPKLRVVDADGTQLGVISRDEALDVARERELDLVLVSEKADPPVCRIMDYGKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDAHDYQVRIGQAVRFLKAGDKVKCTVIFRGREIQHTALAEKLLMRMAKDLEESAEVQQPPKREGRNMIMFLGPRKTPLQKDKPEQATKAER 197          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PROM5 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9515) GN=infC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.335e-24
Identity = 60/156 (38.46%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF 771
            I+   +R++D+    +G++ + +A+++A   ELDLV+VS  A+PPV R+MDY KY++E           S  ++ ++KE+KM Y ID+HDY VR+  A +FLK GDKVK  V  +GR  +  N+A  L+ R  ND+ E +  + +  R+ RN+ +F
Sbjct:   23 IKYPQLRVVDSDGKQLGVIDRIKALEIANQRELDLVLVSEKANPPVCRIMDYGKYKFEQEKKAKEARKKS--HQTEVKEVKMRYKIDKHDYDVRIGQAVRFLKAGDKVKCTVIFRGREIQHSNLAETLLLRMANDLEEQSEVQQRPKREGRNMIMF 176          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_GLOVI (Translation initiation factor IF-3 OS=Gloeobacter violaceus GN=infC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.335e-24
Identity = 60/155 (38.71%), Postives = 91/155 (58.71%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFI 768
            IR   +R IDA    +GI+   +A+++AE+  LDLV+VS DA PPV R+MDY KY++E              +  D+KE+KM Y I +HDY VRL+   +FLKDGDKVK  +  +GR  +  N+A +L+ +   D  E+   ++  +   RN+ +
Sbjct:   40 IRFPKIRAIDADGTQLGIMHPRDALRIAEERNLDLVVVSEDAQPPVCRIMDYGKYKFE--QEKRAKEARKKQHTADVKEVKMRYTIGEHDYQVRLRDTIRFLKDGDKVKATIMFRGREIQHANLAKDLLMQLAADSAEIGEVQQEPSVEGRNMIM 192          
The following BLAST results are available for this feature:
BLAST of EY693221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 297
Match NameE-valueIdentityDescription
IF3_SYNS91.404e-2437.58Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_SYNP21.404e-2436.42Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_THETN2.395e-2439.35Translation initiation factor IF-3 OS=Thermoanaero... [more]
IF3_SILPO3.127e-2441.10Translation initiation factor IF-3 OS=Silicibacter... [more]
IF3_PROM23.127e-2438.46Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_PROM14.085e-2436.81Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3C_PORYE4.085e-2435.80Translation initiation factor IF-3, chloroplastic ... [more]
IF3_SYNR35.335e-2436.87Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_PROM55.335e-2438.46Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_GLOVI5.335e-2438.71Translation initiation factor IF-3 OS=Gloeobacter ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-009-C05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693221 ID=EY693221; Name=EY693221; organism=Citrus sinensis; type=EST; length=848bp
CCACGCGTCCGCCAACTCCCTTCTCCCTTGAAAACACCACTATGGCTGGT
CTCGCCAGCGCCTTTCACTTTTCTAAAACGACACCGTCGCTCTCTTCAAT
CGAGTCCAAGTTCTTCGGCCTCCATTTGTGTAACCTCAACCATTTCTTCC
TCATTTCTTTCTCGCCTTCTTCCCATCACCACAACGTTTCCATCACCGCC
AGATACGGCGNGCGGTGGCGGGCCCCGCTTCGCAGGCTCCGACTACTCCC
GCCGCCGCCAAAAGGAAAAAGATTTGGAAGAAGAGCAAGCCTTTGATATC
GATGGCATCAGGTCGAACACTGTGAGGCTTATTGATGCTCAGCAAAACAT
GGTTGGTATAGTTCCTAAGAGTGAAGCTATTCAAATGGCCGAGGATGCTG
AACTAGACCTGGTGATAGTTTCCCCAGATGCAGATCCTCCAGTTGTCAGA
GTAATGGATTACAATAAATATAGATATGAACAGCAAAAGAAGAAGAAAGG
GCAGCAGAAGAAAAGTGCAGCCAATCGGATGGATTTGAAGGAGCTTAAAA
TGGGTTATAATATTGACCAGCATGATTATTCTGTGCGTCTAAAAGCTGCA
AGGAAGTTTCTGAAAGACGGAGACAAGGTTAAGGTCATAGTGAACCCTCA
AGGGCGGGGAAATGAATTCAGAAATATTGCTATTGAGCTAATACGACGNT
TCCAGAATGATGTTGGGGAGCTTGCTAGTGAGGAGAACAAAAATTTCAGA
GATAGGAATATATTTATATTTTAGGTTCAAAAAGGCCCTCCTACAGAGGG
CTCAGAACACCGNAGAGGAAAGAAAAACAAGTGTAGAGGAAGCTCACT
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