EY693221

Overview
NameEY693221
Unique NameEY693221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PROMT (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain NATL2A) GN=infC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.967e-24
Identity = 63/181 (34.81%), Postives = 106/181 (58.56%), Query Frame = 1
Query:  253 RRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPP 792
            RR  E++L        + I  +++R++D+    +G++ + +A+++A++ ELDLV+VS  A PPV R+M+Y K+++E           S  ++ ++KE+KM Y IDQHDY VR+  A +FLK GDKVK  V  +GR  +   +A  L++R   D+ E A  +    R+ RN+ +F   +  P
Sbjct:    9 RRAPERELPNIN----ERISYSSLRVVDSDGTQLGVISREDALEVAKERELDLVLVSEKATPPVCRIMNYGKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDKVKCTVIFRGREIQHTALAETLLKRMAKDLEEKAEVQQSPKREGRNMIMFLTPRKTP 183          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_LISMO (Translation initiation factor IF-3 OS=Listeria monocytogenes GN=infC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23
Identity = 60/157 (38.22%), Postives = 93/157 (59.24%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFI 768
            DGIR+  VRLID     +G+  K +A+Q+AE A LDLV+V+P A PPV R+MDY K+R+E                + +KE+++   ID+HD+  +L+ ARKFL+ GDKVK  +  +GR    + I  +++ RF     +L + E +   D R++F+
Sbjct:    9 DGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLDLVLVAPTAKPPVARIMDYGKFRFEQQKKDKEARKNQKV--IVMKEVRLSPTIDEHDFDTKLRNARKFLEKGDKVKCSIRFKGRAITHKEIGQKVLDRFAKACEDLCTIEQRPKMDGRSMFL 163          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_LISMF (Translation initiation factor IF-3 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=infC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23
Identity = 60/157 (38.22%), Postives = 93/157 (59.24%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFI 768
            DGIR+  VRLID     +G+  K +A+Q+AE A LDLV+V+P A PPV R+MDY K+R+E                + +KE+++   ID+HD+  +L+ ARKFL+ GDKVK  +  +GR    + I  +++ RF     +L + E +   D R++F+
Sbjct:    9 DGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLDLVLVAPTAKPPVARIMDYGKFRFEQQKKDKEARKNQKV--IVMKEVRLSPTIDEHDFDTKLRNARKFLEKGDKVKCSIRFKGRAITHKEIGQKVLDRFAKACEDLCTIEQRPKMDGRSMFL 163          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_LISIN (Translation initiation factor IF-3 OS=Listeria innocua GN=infC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23
Identity = 60/157 (38.22%), Postives = 93/157 (59.24%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFI 768
            DGIR+  VRLID     +G+  K +A+Q+AE A LDLV+V+P A PPV R+MDY K+R+E                + +KE+++   ID+HD+  +L+ ARKFL+ GDKVK  +  +GR    + I  +++ RF     +L + E +   D R++F+
Sbjct:    9 DGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLDLVLVAPTAKPPVARIMDYGKFRFEQQKKDKEARKNQKV--IVMKEVRLSPTIDEHDFDTKLRNARKFLEKGDKVKCSIRFKGRAITHKEIGQKVLDRFAKACEDLCTIEQRPKMDGRSMFL 163          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_ENTFA (Translation initiation factor IF-3 OS=Enterococcus faecalis GN=infC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.027e-23
Identity = 58/157 (36.94%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFI 768
            DGIR+  +RLI      +G+  K+EA+Q+AE A LDLV+V+P A PPV R+MDY K+R+E                +++KE+++   ID +D++ +L+ ARKFL+ GDKVK  +  +GR    + I  +++ R   +  ++A+ E K   D R++F+
Sbjct:   11 DGIRARELRLIGQDGEQLGVKTKAEALQIAESANLDLVLVAPGAKPPVARIMDYGKFRFEQQKKEREARKKQKV--INVKEVRLSPTIDVNDFNTKLRNARKFLEKGDKVKASIRFKGRAITHKEIGQKVLDRLAEETADIATVEQKAKMDGRSMFL 165          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_BACHD (Translation initiation factor IF-3 OS=Bacillus halodurans GN=infC PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 3.458e-23
Identity = 58/157 (36.94%), Postives = 90/157 (57.32%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENK-NFRDRNIFI 768
            +GIR+  VRLI A  + +G+  K+EA+ MA +  LDLV V+P+A PPV R+MDY KYRYE                +++KE+++   I+ HD++ +L+ ARKFL  GDKVK  +  +GR      I   ++ R   +  ++A  E K     R++F+
Sbjct:    9 EGIRAREVRLIGANGDQIGVKSKAEALDMARNVNLDLVCVAPNAKPPVCRIMDYGKYRYE--QQKKDKEARKKQKTINVKEVRLSPTIEDHDFNTKLRNARKFLSKGDKVKAAIRFRGRAITHSEIGRNVLERLAKECEDIAIVEAKPKMEGRSMFL 163          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_STAES (Translation initiation factor IF-3 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=infC PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.516e-23
Identity = 56/155 (36.13%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENK-NFRDRNIFI 768
            IR+  +RLI      +G+  K EA++MAE  +LDLV+V+P+A PPV R+MDY KY++E                +++KEL++   I++HD+  +LK  RKFL  GDK KV +  +GR    + I   ++ +F ++  ++A+ E K     R +FI
Sbjct:   15 IRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNAKPPVARIMDYGKYKFEQQKKEKEMKKKQKV--INVKELRLSPTIEEHDFQTKLKNGRKFLSKGDKCKVSIRFRGRAITHKEIGQRVLEKFADECKDIATVEQKPKMEGRQMFI 167          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_STAEQ (Translation initiation factor IF-3 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=infC PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.516e-23
Identity = 56/155 (36.13%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENK-NFRDRNIFI 768
            IR+  +RLI      +G+  K EA++MAE  +LDLV+V+P+A PPV R+MDY KY++E                +++KEL++   I++HD+  +LK  RKFL  GDK KV +  +GR    + I   ++ +F ++  ++A+ E K     R +FI
Sbjct:   15 IRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNAKPPVARIMDYGKYKFEQQKKEKEMKKKQKV--INVKELRLSPTIEEHDFQTKLKNGRKFLSKGDKCKVSIRFRGRAITHKEIGQRVLEKFADECKDIATVEQKPKMEGRQMFI 167          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PROMP (Translation initiation factor IF-3 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=infC PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.516e-23
Identity = 58/156 (37.18%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF 771
            I+   +R++D+    +G++ + +A+++A    LDLV+VS  A+PPV R+MDY KY++E           S  ++ ++KE+KM Y ID+HDY VR+  A +FLK GDKVK  V  +GR  +  N+A  L+ +  ND+ E +  + +  R+ RN+ +F
Sbjct:   23 IKYPQLRVVDSDGKQLGVIDRIKALEIAHQRGLDLVLVSEKANPPVCRIMDYGKYKFEQEKKAKETKKKS--HQTEVKEVKMRYKIDKHDYDVRIGQAVRFLKSGDKVKCTVFFRGREIQHSNLAETLLLKMANDLEEQSEVQQRPKREGRNMIMF 176          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PASMU (Translation initiation factor IF-3 OS=Pasteurella multocida GN=infC PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.516e-23
Identity = 57/146 (39.04%), Postives = 88/146 (60.27%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEEN 738
            D IR   VRLID      GIV   +A++MAE AELDLV +SP+A+PPV R+M+Y K+ YE                + +KE+K     D+ DY V+L++  +FL++GDK K+ V  +GR    ++I +E++ R +ND+ E++  E+
Sbjct:   18 DEIRVKEVRLIDQDGEQAGIVSIQQALEMAEQAELDLVEISPNAEPPVCRIMNYGKFLYEKGKAAKEQKKKQKV--VQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITVRFRGREMAHQDIGLEVLERVKNDLAEISVVES 161          
The following BLAST results are available for this feature:
BLAST of EY693221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 297
Match NameE-valueIdentityDescription
IF3_PROMT6.967e-2434.81Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_LISMO1.188e-2338.22Translation initiation factor IF-3 OS=Listeria mon... [more]
IF3_LISMF1.188e-2338.22Translation initiation factor IF-3 OS=Listeria mon... [more]
IF3_LISIN1.188e-2338.22Translation initiation factor IF-3 OS=Listeria inn... [more]
IF3_ENTFA2.027e-2336.94Translation initiation factor IF-3 OS=Enterococcus... [more]
IF3_BACHD3.458e-2336.94Translation initiation factor IF-3 OS=Bacillus hal... [more]
IF3_STAES4.516e-2336.13Translation initiation factor IF-3 OS=Staphylococc... [more]
IF3_STAEQ4.516e-2336.13Translation initiation factor IF-3 OS=Staphylococc... [more]
IF3_PROMP4.516e-2337.18Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_PASMU4.516e-2339.04Translation initiation factor IF-3 OS=Pasteurella ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-009-C05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693221 ID=EY693221; Name=EY693221; organism=Citrus sinensis; type=EST; length=848bp
CCACGCGTCCGCCAACTCCCTTCTCCCTTGAAAACACCACTATGGCTGGT
CTCGCCAGCGCCTTTCACTTTTCTAAAACGACACCGTCGCTCTCTTCAAT
CGAGTCCAAGTTCTTCGGCCTCCATTTGTGTAACCTCAACCATTTCTTCC
TCATTTCTTTCTCGCCTTCTTCCCATCACCACAACGTTTCCATCACCGCC
AGATACGGCGNGCGGTGGCGGGCCCCGCTTCGCAGGCTCCGACTACTCCC
GCCGCCGCCAAAAGGAAAAAGATTTGGAAGAAGAGCAAGCCTTTGATATC
GATGGCATCAGGTCGAACACTGTGAGGCTTATTGATGCTCAGCAAAACAT
GGTTGGTATAGTTCCTAAGAGTGAAGCTATTCAAATGGCCGAGGATGCTG
AACTAGACCTGGTGATAGTTTCCCCAGATGCAGATCCTCCAGTTGTCAGA
GTAATGGATTACAATAAATATAGATATGAACAGCAAAAGAAGAAGAAAGG
GCAGCAGAAGAAAAGTGCAGCCAATCGGATGGATTTGAAGGAGCTTAAAA
TGGGTTATAATATTGACCAGCATGATTATTCTGTGCGTCTAAAAGCTGCA
AGGAAGTTTCTGAAAGACGGAGACAAGGTTAAGGTCATAGTGAACCCTCA
AGGGCGGGGAAATGAATTCAGAAATATTGCTATTGAGCTAATACGACGNT
TCCAGAATGATGTTGGGGAGCTTGCTAGTGAGGAGAACAAAAATTTCAGA
GATAGGAATATATTTATATTTTAGGTTCAAAAAGGCCCTCCTACAGAGGG
CTCAGAACACCGNAGAGGAAAGAAAAACAAGTGTAGAGGAAGCTCACT
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