EY693221

Overview
NameEY693221
Unique NameEY693221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_BACSU (Translation initiation factor IF-3 OS=Bacillus subtilis GN=infC PE=3 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 8.517e-22
Identity = 58/157 (36.94%), Postives = 93/157 (59.24%), Query Frame = 1
Query:  301 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFI 768
            +GIR+  VRLI    + +GI  + EA+++A  A LDLV+V+ +A PPV R+MDY K+R+E                ++LKE+++   ID+HD++ +L+ A KFL+ GDKVK  +  +GR    + I   ++ RF     E+A+ E K   D R++F+
Sbjct:   10 EGIRAREVRLIGQNGDQLGIKSRQEALEIAGRANLDLVLVAANAKPPVCRIMDYGKFRFEQQKKEKEARKNQKI--INLKEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIRFKGRAITHKEIGQRVLDRFSEACAEVATVETKPKMDGRSMFL 164          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_ZYMMO (Translation initiation factor IF-3 OS=Zymomonas mobilis GN=infC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 54/143 (37.76%), Postives = 85/143 (59.44%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEE 735
            I+S  VR+ID     +G++   +A++ A++  LDLV VSP+ADPPV + +D  KY+YE                 ++KE+K+  NIDQHDY  ++K   +FL+DGDKVKV +  +GR      + +++++R Q D  E+A  E
Sbjct:   22 IQSPRVRVIDENGENLGVMYTRQAMEQAQEVGLDLVEVSPNADPPVAKFLDVGKYKYEAQKKANLAR--KTQKTQEIKEIKLRPNIDQHDYDTKMKKIVQFLEDGDKVKVTLRFRGREMAHGQLGMQVMQRVQADTQEIAKVE 162          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_THETH (Translation initiation factor IF-3 OS=Thermus thermophilus GN=infC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 53/145 (36.55%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENK 741
            IR+  VR++      +GI+   EA+++A++ +LDLV+V P+ADPPV R+MDY+K+RYE             A R ++K +K    ID+HDY  +L   ++FL++G KVKV +  +GR      +   ++ R   D+ +LA  E K
Sbjct:   10 IRAKQVRVVGPDGKQLGIMDTREALRLAQEMDLDLVLVGPNADPPVARIMDYSKWRYE--QQMAEKEARKKAKRTEVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKDLAVVEMK 152          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_THET8 (Translation initiation factor IF-3 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=infC PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 53/145 (36.55%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENK 741
            IR+  VR++      +GI+   EA+++A++ +LDLV+V P+ADPPV R+MDY+K+RYE             A R ++K +K    ID+HDY  +L   ++FL++G KVKV +  +GR      +   ++ R   D+ +LA  E K
Sbjct:   10 IRAKQVRVVGPDGKQLGIMDTREALRLAQEMDLDLVLVGPNADPPVARIMDYSKWRYE--QQMAEKEARKKAKRTEVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKDLAVVEMK 152          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_THET2 (Translation initiation factor IF-3 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=infC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 53/145 (36.55%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENK 741
            IR+  VR++      +GI+   EA+++A++ +LDLV+V P+ADPPV R+MDY+K+RYE             A R ++K +K    ID+HDY  +L   ++FL++G KVKV +  +GR      +   ++ R   D+ +LA  E K
Sbjct:   10 IRAKQVRVVGPDGKQLGIMDTREALRLAQEMDLDLVLVGPNADPPVARIMDYSKWRYE--QQMAEKEARKKAKRTEVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKDLAVVEMK 152          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_BACST (Translation initiation factor IF-3 OS=Bacillus stearothermophilus GN=infC PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 56/155 (36.13%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFI 768
            IR+  VRLID   + +GI  K EA+++A    LDLV+V+P+A PPV R+MDY K+R+E                +++KE+++   I++HD++ +L+ ARKFL+ GDKVK  +  +GR    + I   ++ R      ++A  E     D RN+F+
Sbjct:   11 IRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARKKQKV--INVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDGRNMFL 163          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_RHOS4 (Translation initiation factor IF-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=infC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.478e-21
Identity = 54/138 (39.13%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGE 720
            IR   VRLI A    +G+V  S A+ MAE+A LDLV +SP+A+PPV ++MD+ K++YE              + +++KE+K     D HDY V++++  KFL +GDKVKV +  +GR    + + +EL+ R    V E
Sbjct:   22 IRCPEVRLIGANGENIGVVTPSRAMMMAEEAGLDLVEISPNAEPPVCKIMDFGKFKYE--QQKREAEARKKQHIIEIKEIKFRPGTDTHDYDVKMRSVLKFLSEGDKVKVTLRFRGREMAHQELGLELLNRVAAHVSE 157          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PROMH (Translation initiation factor IF-3 OS=Proteus mirabilis (strain HI4320) GN=infC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.478e-21
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEEN 738
            IR++ VRL       +G+V   EA++ AE+A  DLV +SP+A+PPV R+MDY K+ YE                + +KE+K     D+ DY V+L+   +FL+DGDK KV +  +GR    + I +E++ R + D+ ELAS E+
Sbjct:   19 IRAHEVRLTGLDGEQIGVVSLKEALEKAEEAGADLVEISPNAEPPVCRIMDYGKFLYEKSKTLKEQKKKQKV--IQVKEVKFRPGTDEGDYQVKLRNLIRFLEDGDKAKVTLRFRGREMAHQQIGMEMLNRIREDLDELASVES 160          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PECCP (Translation initiation factor IF-3 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=infC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.478e-21
Identity = 55/144 (38.19%), Postives = 86/144 (59.72%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEEN 738
            IR++ VRL   +   +GIV  +EA++ AE+A +DLV +SP+A+PPV R+MDY K+ YE                + +KE+K     D  DY V+L+   +FL+DGDK K+ +  +GR    + I IE++ R ++D+ ELA  E+
Sbjct:   19 IRAHEVRLTGVEGEQLGIVSLNEALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKATKEQKKKQKV--IQVKEIKFRPGTDDGDYQVKLRNLIRFLEDGDKAKITLRFRGREMAHQQIGIEVLNRVRDDLSELAVVES 160          
BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_HAEIN (Translation initiation factor IF-3 OS=Haemophilus influenzae GN=infC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.478e-21
Identity = 56/145 (38.62%), Postives = 87/145 (60.00%), Query Frame = 1
Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQM-AEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEEN 738
            IR   VRLID      GIV   +A++M AE AELDLV +SP+A+PPV R+M+Y K+ YE                + +KE+K     D+ DY V+L++  +FL+DGDK K+ V  +GR    ++I ++++ R +ND+ E++  E+
Sbjct:   11 IRVKEVRLIDQNGEQAGIVSIQQALEMMAEQAELDLVEISPNAEPPVCRIMNYGKFLYEKSKTAKEQKKKQKV--VQVKEIKFRPGTDEGDYQVKLRSLIRFLEDGDKAKITVRFRGREMAHQDIGLDVLERVKNDLAEISVVES 153          
The following BLAST results are available for this feature:
BLAST of EY693221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 297
Match NameE-valueIdentityDescription
IF3_BACSU8.517e-2236.94Translation initiation factor IF-3 OS=Bacillus sub... [more]
IF3_ZYMMO1.897e-2137.76Translation initiation factor IF-3 OS=Zymomonas mo... [more]
IF3_THETH1.897e-2136.55Translation initiation factor IF-3 OS=Thermus ther... [more]
IF3_THET81.897e-2136.55Translation initiation factor IF-3 OS=Thermus ther... [more]
IF3_THET21.897e-2136.55Translation initiation factor IF-3 OS=Thermus ther... [more]
IF3_BACST1.897e-2136.13Translation initiation factor IF-3 OS=Bacillus ste... [more]
IF3_RHOS42.478e-2139.13Translation initiation factor IF-3 OS=Rhodobacter ... [more]
IF3_PROMH2.478e-2138.19Translation initiation factor IF-3 OS=Proteus mira... [more]
IF3_PECCP2.478e-2138.19Translation initiation factor IF-3 OS=Pectobacteri... [more]
IF3_HAEIN2.478e-2138.62Translation initiation factor IF-3 OS=Haemophilus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-009-C05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693221 ID=EY693221; Name=EY693221; organism=Citrus sinensis; type=EST; length=848bp
CCACGCGTCCGCCAACTCCCTTCTCCCTTGAAAACACCACTATGGCTGGT
CTCGCCAGCGCCTTTCACTTTTCTAAAACGACACCGTCGCTCTCTTCAAT
CGAGTCCAAGTTCTTCGGCCTCCATTTGTGTAACCTCAACCATTTCTTCC
TCATTTCTTTCTCGCCTTCTTCCCATCACCACAACGTTTCCATCACCGCC
AGATACGGCGNGCGGTGGCGGGCCCCGCTTCGCAGGCTCCGACTACTCCC
GCCGCCGCCAAAAGGAAAAAGATTTGGAAGAAGAGCAAGCCTTTGATATC
GATGGCATCAGGTCGAACACTGTGAGGCTTATTGATGCTCAGCAAAACAT
GGTTGGTATAGTTCCTAAGAGTGAAGCTATTCAAATGGCCGAGGATGCTG
AACTAGACCTGGTGATAGTTTCCCCAGATGCAGATCCTCCAGTTGTCAGA
GTAATGGATTACAATAAATATAGATATGAACAGCAAAAGAAGAAGAAAGG
GCAGCAGAAGAAAAGTGCAGCCAATCGGATGGATTTGAAGGAGCTTAAAA
TGGGTTATAATATTGACCAGCATGATTATTCTGTGCGTCTAAAAGCTGCA
AGGAAGTTTCTGAAAGACGGAGACAAGGTTAAGGTCATAGTGAACCCTCA
AGGGCGGGGAAATGAATTCAGAAATATTGCTATTGAGCTAATACGACGNT
TCCAGAATGATGTTGGGGAGCTTGCTAGTGAGGAGAACAAAAATTTCAGA
GATAGGAATATATTTATATTTTAGGTTCAAAAAGGCCCTCCTACAGAGGG
CTCAGAACACCGNAGAGGAAAGAAAAACAAGTGTAGAGGAAGCTCACT
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