EY693221 | Citrus Genome Database

Overview


Name	EY693221
Unique Name	EY693221
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	848

Libraries


Library Name	Type
Sweet orange fruit, development stadium (1 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_STRZJ (Translation initiation factor IF-3 OS=Streptococcus pneumoniae (strain JJA) GN=infC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 59/186 (31.72%), Postives = 103/186 (55.38%), Query Frame = 1

Query:  244 YSRRRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPPTE 798
            +S + ++ K + ++  F  D IR   VRLI  +   +GI P SEA  +A++A +DLV++ P A PPV ++MDY K+++E            +   + +KE+++   ID+ D+  +L+ ARKFL+ G+KVKV +  +GR    + I  +++  F     ++A  E +   D R +F   +Q  P T+
Sbjct:    3 FSNKTKEVKTIAKQDLFINDEIRVREVRLIGLEGEQLGIKPLSEAQALADNANVDLVLIQPQAKPPVAKIMDYGKFKFEYQKKQKEQRKKQSV--VTVKEVRLSPTIDKGDFDTKLRNARKFLEKGNKVKVSIRFKGRMITHKEIGAKVLAEFAEATQDIAIIEQRAKMDGRQMF---MQLAPATD 183

[Close]

BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_STRR6 (Translation initiation factor IF-3 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=infC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 59/186 (31.72%), Postives = 103/186 (55.38%), Query Frame = 1

Query:  244 YSRRRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPPTE 798
            +S + ++ K + ++  F  D IR   VRLI  +   +GI P SEA  +A++A +DLV++ P A PPV ++MDY K+++E            +   + +KE+++   ID+ D+  +L+ ARKFL+ G+KVKV +  +GR    + I  +++  F     ++A  E +   D R +F   +Q  P T+
Sbjct:    3 FSNKTKEVKTIAKQDLFINDEIRVREVRLIGLEGEQLGIKPLSEAQALADNANVDLVLIQPQAKPPVAKIMDYGKFKFEYQKKQKEQRKKQSV--VTVKEVRLSPTIDKGDFDTKLRNARKFLEKGNKVKVSIRFKGRMITHKEIGAKVLAEFAEATQDIAIIEQRAKMDGRQMF---MQLAPATD 183

[Close]

BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_STRPN (Translation initiation factor IF-3 OS=Streptococcus pneumoniae GN=infC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 59/186 (31.72%), Postives = 103/186 (55.38%), Query Frame = 1

Query:  244 YSRRRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPPTE 798
            +S + ++ K + ++  F  D IR   VRLI  +   +GI P SEA  +A++A +DLV++ P A PPV ++MDY K+++E            +   + +KE+++   ID+ D+  +L+ ARKFL+ G+KVKV +  +GR    + I  +++  F     ++A  E +   D R +F   +Q  P T+
Sbjct:    3 FSNKTKEVKTIAKQDLFINDEIRVREVRLIGLEGEQLGIKPLSEAQALADNANVDLVLIQPQAKPPVAKIMDYGKFKFEYQKKQKEQRKKQSV--VTVKEVRLSPTIDKGDFDTKLRNARKFLEKGNKVKVSIRFKGRMITHKEIGAKVLAEFAEATQDIAIIEQRAKMDGRQMF---MQLAPATD 183

[Close]

BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_STRPJ (Translation initiation factor IF-3 OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=infC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 59/186 (31.72%), Postives = 103/186 (55.38%), Query Frame = 1

Query:  244 YSRRRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPPTE 798
            +S + ++ K + ++  F  D IR   VRLI  +   +GI P SEA  +A++A +DLV++ P A PPV ++MDY K+++E            +   + +KE+++   ID+ D+  +L+ ARKFL+ G+KVKV +  +GR    + I  +++  F     ++A  E +   D R +F   +Q  P T+
Sbjct:    3 FSNKTKEVKTIAKQDLFINDEIRVREVRLIGLEGEQLGIKPLSEAQALADNANVDLVLIQPQAKPPVAKIMDYGKFKFEYQKKQKEQRKKQSV--VTVKEVRLSPTIDKGDFDTKLRNARKFLEKGNKVKVSIRFKGRMITHKEIGAKVLAEFAEATQDIAIIEQRAKMDGRQMF---MQLAPATD 183

[Close]

BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_STRPI (Translation initiation factor IF-3 OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=infC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 59/186 (31.72%), Postives = 103/186 (55.38%), Query Frame = 1

Query:  244 YSRRRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPPTE 798
            +S + ++ K + ++  F  D IR   VRLI  +   +GI P SEA  +A++A +DLV++ P A PPV ++MDY K+++E            +   + +KE+++   ID+ D+  +L+ ARKFL+ G+KVKV +  +GR    + I  +++  F     ++A  E +   D R +F   +Q  P T+
Sbjct:    3 FSNKTKEVKTIAKQDLFINDEIRVREVRLIGLEGEQLGIKPLSEAQALADNANVDLVLIQPQAKPPVAKIMDYGKFKFEYQKKQKEQRKKQSV--VTVKEVRLSPTIDKGDFDTKLRNARKFLEKGNKVKVSIRFKGRMITHKEIGAKVLAEFAEATQDIAIIEQRAKMDGRQMF---MQLAPATD 183

[Close]

BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_STRP7 (Translation initiation factor IF-3 OS=Streptococcus pneumoniae (strain 70585) GN=infC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 59/186 (31.72%), Postives = 103/186 (55.38%), Query Frame = 1

Query:  244 YSRRRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPPTE 798
            +S + ++ K + ++  F  D IR   VRLI  +   +GI P SEA  +A++A +DLV++ P A PPV ++MDY K+++E            +   + +KE+++   ID+ D+  +L+ ARKFL+ G+KVKV +  +GR    + I  +++  F     ++A  E +   D R +F   +Q  P T+
Sbjct:    3 FSNKTKEVKTIAKQDLFINDEIRVREVRLIGLEGEQLGIKPLSEAQALADNANVDLVLIQPQAKPPVAKIMDYGKFKFEYQKKQKEQRKKQSV--VTVKEVRLSPTIDKGDFDTKLRNARKFLEKGNKVKVSIRFKGRMITHKEIGAKVLAEFAEATQDIAIIEQRAKMDGRQMF---MQLAPATD 183

[Close]

BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_STRP2 (Translation initiation factor IF-3 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=infC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 59/186 (31.72%), Postives = 103/186 (55.38%), Query Frame = 1

Query:  244 YSRRRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIF*VQKGPPTE 798
            +S + ++ K + ++  F  D IR   VRLI  +   +GI P SEA  +A++A +DLV++ P A PPV ++MDY K+++E            +   + +KE+++   ID+ D+  +L+ ARKFL+ G+KVKV +  +GR    + I  +++  F     ++A  E +   D R +F   +Q  P T+
Sbjct:    3 FSNKTKEVKTIAKQDLFINDEIRVREVRLIGLEGEQLGIKPLSEAQALADNANVDLVLIQPQAKPPVAKIMDYGKFKFEYQKKQKEQRKKQSV--VTVKEVRLSPTIDKGDFDTKLRNARKFLEKGNKVKVSIRFKGRMITHKEIGAKVLAEFAEATQDIAIIEQRAKMDGRQMF---MQLAPATD 183

[Close]

BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_RHILW (Translation initiation factor IF-3 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=infC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 56/151 (37.09%), Postives = 88/151 (58.28%), Query Frame = 1

Query:  301 DGIRSNT------VRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEE 735
            DG RSN       V+LI A    +G+VP  +A++MAE+A LDLV +SP+ +PPV +++D  K +Y                 +++KE+KM  NID HDY V++KA  +F  +GDKVKV +  +GR    + + ++L+++ + D  E A  E
Sbjct:   13 DGPRSNREIRIPKVQLIGADGENMGVVPTDQALRMAEEAGLDLVEISPNVEPPVCKILDLGKLKYANQKKAAEARKKQKI--VEVKEIKMRPNIDTHDYEVKMKAMGRFFDEGDKVKVTLKFRGREMAHQELGMKLLQQVKADTTEFAKVE 161

[Close]

BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_PROVU (Translation initiation factor IF-3 OS=Proteus vulgaris GN=infC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 54/144 (37.50%), Postives = 84/144 (58.33%), Query Frame = 1

Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEEN 738
            IR++ VRL       +G+V   EA++ AE+A  DLV +SP+A+PPV R+MDY K+ YE                + +KE+K     D+ DY V+L+   +FL+DGDK KV +  +GR    + I +E++ R + D+ ELA+ E+
Sbjct:   19 IRAHEVRLTGLDGEQIGVVSLKEALEKAEEAGADLVEISPNAEPPVCRIMDYGKFLYEKSKTLKEQKKEQKV--IQVKEVKFRPGTDEGDYQVKLRNLIRFLEDGDKAKVTLRFRGREMAHQQIGMEVLNRIRQDLDELATVES 160

[Close]

BLAST of EY693221 vs. ExPASy Swiss-Prot
Match: IF3_KLEPN (Translation initiation factor IF-3 OS=Klebsiella pneumoniae GN=infC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 55/143 (38.46%), Postives = 85/143 (59.44%), Query Frame = 1

Query:  307 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRVMDYNKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNPQGRGNEFRNIAIELIRRFQNDVGELASEE 735
            IR+  VRL   +   +GIV   EAI+ AE+A +DLV +SP+A+PPV R+MDY K+ YE                + +KE+K     D+ DY V+L++  +FL+DGDK K+ +  +GR    + I +E++ R ++D+ ELA  E
Sbjct:   19 IRAQEVRLTGLEGEQLGIVSLREAIEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQKV--IQVKEIKFRPGTDEGDYQVKLRSLIRFLEDGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLVELAVVE 159

The following BLAST results are available for this feature:

BLAST of EY693221 vs. ExPASy Swiss-Prot

BLAST of EY693221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 297


Match Name	E-value	Identity	Description
IF3_STRZJ	7.210e-21	31.72	Translation initiation factor IF-3 OS=Streptococcu...	[more]
IF3_STRR6	7.210e-21	31.72	Translation initiation factor IF-3 OS=Streptococcu...	[more]
IF3_STRPN	7.210e-21	31.72	Translation initiation factor IF-3 OS=Streptococcu...	[more]
IF3_STRPJ	7.210e-21	31.72	Translation initiation factor IF-3 OS=Streptococcu...	[more]
IF3_STRPI	7.210e-21	31.72	Translation initiation factor IF-3 OS=Streptococcu...	[more]
IF3_STRP7	7.210e-21	31.72	Translation initiation factor IF-3 OS=Streptococcu...	[more]
IF3_STRP2	7.210e-21	31.72	Translation initiation factor IF-3 OS=Streptococcu...	[more]
IF3_RHILW	7.210e-21	37.09	Translation initiation factor IF-3 OS=Rhizobium le...	[more]
IF3_PROVU	7.210e-21	37.50	Translation initiation factor IF-3 OS=Proteus vulg...	[more]
IF3_KLEPN	7.210e-21	38.46	Translation initiation factor IF-3 OS=Klebsiella p...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-700-009-C05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY693221 ID=EY693221; Name=EY693221; organism=Citrus sinensis; type=EST; length=848bp
CCACGCGTCCGCCAACTCCCTTCTCCCTTGAAAACACCACTATGGCTGGT
CTCGCCAGCGCCTTTCACTTTTCTAAAACGACACCGTCGCTCTCTTCAAT
CGAGTCCAAGTTCTTCGGCCTCCATTTGTGTAACCTCAACCATTTCTTCC
TCATTTCTTTCTCGCCTTCTTCCCATCACCACAACGTTTCCATCACCGCC
AGATACGGCGNGCGGTGGCGGGCCCCGCTTCGCAGGCTCCGACTACTCCC
GCCGCCGCCAAAAGGAAAAAGATTTGGAAGAAGAGCAAGCCTTTGATATC
GATGGCATCAGGTCGAACACTGTGAGGCTTATTGATGCTCAGCAAAACAT
GGTTGGTATAGTTCCTAAGAGTGAAGCTATTCAAATGGCCGAGGATGCTG
AACTAGACCTGGTGATAGTTTCCCCAGATGCAGATCCTCCAGTTGTCAGA
GTAATGGATTACAATAAATATAGATATGAACAGCAAAAGAAGAAGAAAGG
GCAGCAGAAGAAAAGTGCAGCCAATCGGATGGATTTGAAGGAGCTTAAAA
TGGGTTATAATATTGACCAGCATGATTATTCTGTGCGTCTAAAAGCTGCA
AGGAAGTTTCTGAAAGACGGAGACAAGGTTAAGGTCATAGTGAACCCTCA
AGGGCGGGGAAATGAATTCAGAAATATTGCTATTGAGCTAATACGACGNT
TCCAGAATGATGTTGGGGAGCTTGCTAGTGAGGAGAACAAAAATTTCAGA
GATAGGAATATATTTATATTTTAGGTTCAAAAAGGCCCTCCTACAGAGGG
CTCAGAACACCGNAGAGGAAAGAAAAACAAGTGTAGAGGAAGCTCACT