EY693196

Overview
NameEY693196
Unique NameEY693196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693196 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.849e-24
Identity = 64/167 (38.32%), Postives = 91/167 (54.49%), Query Frame = 1
Query:  169 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPP 651
            +G I+++  F+ ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +C+I E++  S DYCD N   YPC  GK Y+GRGPIQLSWNYNY  C             P+L++++P ++F++ +WFWM +  P
Sbjct:   72 VGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHET-------------GHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC--GQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218          
BLAST of EY693196 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.223e-23
Identity = 68/162 (41.98%), Postives = 82/162 (50.62%), Query Frame = 1
Query:  178 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPP--SDYCDPN----YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMT 639
            I+S+  FD ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C I E        YCD +    YPC    KYYGRGP+QLSWNYNY               NP+ +ATD   SFK+A+WFWMT
Sbjct:   90 IVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          
BLAST of EY693196 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.223e-23
Identity = 64/180 (35.56%), Postives = 92/180 (51.11%), Query Frame = 1
Query:  190 EMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWXPISNDVN 711
            E F + ++ +    C  + FYT  +F+ AA ++ GF         KREIAAFFA   HET                C+I+E++  S DYCD N   +PC+   KYYGRGP+Q+SWNYNY               +PD +A DP +SFK+A+WFWM       + H+V++  +      +N
Sbjct:   93 EAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMN------NVHQVMLQGFGATIRAIN 251          
BLAST of EY693196 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.103e-22
Identity = 59/155 (38.06%), Postives = 85/155 (54.84%), Query Frame = 1
Query:  190 EMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 636
            E F + ++ +    C  + FYT  +F+ AA+++ GF N       KREIAAFFA   HET                C+I+E++  + DYCD +   +PC+   KYYGRGP+Q+SWN+NY               +PD +A DP +SFK+A+WFWM
Sbjct:   90 EAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229          
BLAST of EY693196 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.548e-21
Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 1
Query:  178 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCD----PNYPCRGK--YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 636
            I++ +  + +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+I E+   S DYCD      YPC     Y+GRGPIQLSWN+NY                P+ ++ D V+SFK+A+W+WM
Sbjct:   71 ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          
The following BLAST results are available for this feature:
BLAST of EY693196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI4_BRANA5.849e-2438.32Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIP_BETVU2.223e-2341.98Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI5_ORYSJ2.223e-2335.56Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.103e-2238.06Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU3.548e-2136.88Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-009-A03-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693196 ID=EY693196; Name=EY693196; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGTGATATCATAACTGTTGCTTTCAAAATGAGGCTTATTGG
GTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGCTCAG
CACAGAACTGTGGAAGCGGCGTTGTGTACGGTGGACGTGATACCGGCCAT
GGGACGCATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGA
TGACTTGCTTGAGTATAGAAATGATGAACGATGCCCTGCCAGAGGCTTCT
ACACTTATGATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGT
AACTCTGGAAATGAAACCATGCGTAAAAGAGAAATCGCTGCCTTTTTTGC
CCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGCG
AATATGCTTGGGGATATTGCTTTATAAGCGAAGTTAGCCCTCCGTCCGAC
TACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCC
AATTCAACTCTCTTGGAATTACAATTACTTACGGTGCGGAGAAGGCCTAN
GGCTAGGAGAAGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCA
GTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACC
AAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGNAACCCATCAGCA
ATGACGTAAACGCCGGCCGGGCTTCGGGATACNGTCTAACCACAATATAA
TCNAACGTGGAATTTGATGTNGNCAANGTGGGAATGCCGCTGTACGTAAC
CGTATTGGGTCTTTACACTTTCTGTGGCAGTTTGGGATCAGCCTGTGACA
GTCTTGATGCTACAACACGACCTATGGGCTTATCTGATGCCAATC
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