EY693180

Overview
NameEY693180
Unique NameEY693180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAP_CANAL (Poly(A) polymerase PAPalpha OS=Candida albicans GN=PAPALPHA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.109e-40
Identity = 63/126 (50.00%), Postives = 88/126 (69.84%), Query Frame = 3
Query:   21 LRCLKFWAKRRGIYSNANGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICE 398
            LRC+K WA++R +Y N  GF GGV WA+LVAR+CQLYPNA+ S +V +FF +YT+W WP PV++  IE G L   VW+PR  P DR HRMP+ITPAY  M +++ ++  T +V+  +   G+ I +
Sbjct:  210 LRCIKLWAQQRAVYGNIFGFPGGVAWAMLVARICQLYPNAVSSAIVEKFFNIYTKWNWPEPVLLKSIEDGPLQVRVWNPRLYPHDRLHRMPVITPAYPSMCATHNITSSTQKVILAELSRGSSIMQ 335          

HSP 2 Score: 40.0466 bits (92), Expect = 4.109e-40
Identity = 23/59 (38.98%), Postives = 31/59 (52.54%), Query Frame = 1
Query:  484 QEIELGKADWSALFEHYPFFDAYENYL-QVDIVXXXXXXLLTWKGWVESRFIQLTLEVK 657
            QEI  GK  WS LFE + FF  Y+ YL  V            W G++ES+  QL L+++
Sbjct:  335 QEIHAGKKTWSDLFEKHSFFYKYKFYLCVVAASIDSAEEHKKWSGFIESKLRQLVLKLE 393          
BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAP_SCHPO (Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe GN=pla1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.184e-39
Identity = 61/126 (48.41%), Postives = 90/126 (71.43%), Query Frame = 3
Query:   21 LRCLKFWAKRRGIYSNANGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICE 398
            LR +KFWA+RR IY+N  GF GGV WA++VAR+CQLYPNA+ S++V++FFR+  QW WP P+++ PIE G L   +W+P+  P D++HRMPIITPAY  M +++ ++L T  ++  +      I +
Sbjct:  210 LRAIKFWAQRRAIYANVVGFPGGVAWAMMVARICQLYPNAVSSVIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPSDKAHRMPIITPAYPSMCATHNITLSTQTIILREMVRAGEIAD 335          

HSP 2 Score: 38.1206 bits (87), Expect = 1.184e-39
Identity = 17/49 (34.69%), Postives = 25/49 (51.02%), Query Frame = 1
Query:  511 WSALFEHYPFFDAYENYLQVDIVXXXXXXLLTWKGWVESRFIQLTLEVK 657
            WSALF+ + FF  Y++YL +          L W G VES+   L   ++
Sbjct:  344 WSALFQKHDFFHRYKHYLTITAAAKTAEAQLKWAGLVESKLRHLVTRLE 392          
BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAPA_CANAL (Poly(A) polymerase PAPa OS=Candida albicans GN=PAPA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.765e-37
Identity = 62/121 (51.24%), Postives = 87/121 (71.90%), Query Frame = 3
Query:   21 LRCLKFWAKRRGIYSNANGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCG 383
            LRC+K WA++R +Y N  GF GGV WA+LVAR+CQLYPNA+ +++V +FF +Y+QW WP PV++  IE G L   VW+PR    DR HRMP+ITPAY  M +++ ++  T +V+  +FQ G
Sbjct:  210 LRCIKMWAQQRAVYGNIFGFPGGVAWAMLVARICQLYPNAVSAVIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYALDRQHRMPVITPAYPSMCATHNITSSTQKVILSEFQRG 330          

HSP 2 Score: 30.0314 bits (66), Expect = 6.765e-37
Identity = 18/49 (36.73%), Postives = 24/49 (48.98%), Query Frame = 1
Query:  487 EIELGKADWSALFEHYPFFDAYENYL-QVDIVXXXXXXLLTWKGWVESR 630
            +I +GK  WS L E + FF  Y+ YL  V          L + G VES+
Sbjct:  336 DINVGKKSWSDLLERHDFFFRYKFYLCIVAATRSTYAEHLKYSGMVESK 384          
BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAP_YEAST (Poly(A) polymerase OS=Saccharomyces cerevisiae GN=PAP1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.148e-36
Identity = 62/127 (48.82%), Postives = 92/127 (72.44%), Query Frame = 3
Query:   12 RTTLRCLKFWAKRRGIYSNANGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRI 392
            R  LR +K WA+RR +Y+N  GF GGV WA+LVAR+CQLYPNA  +++++RFF + ++W WP PV++ PIE G L   VW+P+   +DRSHRMP+ITPAY  M +++ ++  T +V+ ++F  G +I
Sbjct:  208 RIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQI 334          

HSP 2 Score: 33.113 bits (74), Expect = 1.148e-36
Identity = 22/61 (36.07%), Postives = 29/61 (47.54%), Query Frame = 1
Query:  481 TQEIELGKADWSALFEHYPFFDAYENYLQVD-IVXXXXXXLLTWKGWVES--RFIQLTLEV 654
            T +I   K  W+ LFE   FF  Y+ YL++           L W G VES  R + + LEV
Sbjct:  335 TNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV 395          
BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAPO2_XENLA (Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-B PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.283e-31
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 3
Query:  102 LLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICE 398
            +LVAR CQLYPNAI S LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y VS+ T  VM E+F+ G  I +
Sbjct:    1 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITD 99          

HSP 2 Score: 38.1206 bits (87), Expect = 6.283e-31
Identity = 21/53 (39.62%), Postives = 28/53 (52.83%), Query Frame = 1
Query:  472 LCPTQEIELGKADWSALFEHYPFFDAYENYLQVDIVXXXXXXLLTWKGWVESR 630
            L  T EI L KA+WS LF+   FF  Y++Y+ +          L W G VES+
Sbjct:   95 LAITDEILLVKAEWSKLFDAPNFFQKYKHYILLLASAPTEKQRLEWVGLVESK 147          
The following BLAST results are available for this feature:
BLAST of EY693180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PAP_CANAL4.109e-4050.00Poly(A) polymerase PAPalpha OS=Candida albicans GN... [more]
PAP_SCHPO1.184e-3948.41Poly(A) polymerase pla1 OS=Schizosaccharomyces pom... [more]
PAPA_CANAL6.765e-3751.24Poly(A) polymerase PAPa OS=Candida albicans GN=PAP... [more]
PAP_YEAST1.148e-3648.82Poly(A) polymerase OS=Saccharomyces cerevisiae GN=... [more]
PAPO2_XENLA6.283e-3156.57Poly(A) polymerase alpha-B OS=Xenopus laevis GN=pa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-008-G08-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693180 ID=EY693180; Name=EY693180; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCGCACGACGCTCAGATGTCTGAAGTTCTGGGCTAAAAGG
CGCGGCATTTATTCAAACGCTAATGGATTCCTTGGTGGTGTAAATTGGGC
TCTTCTGGTTGCACGCGTGTGCCAACTTTATCCCAATGCAATTCCCAGTA
TGCTAGTTTCTCGGTTTTTTAGAGTGTATACACAGTGGCGTTGGCCAAAC
CCTGTCATGATGTGTCCAATAGAAATGGGTGAACTGGGGTTCTCAGTGTG
GGATCCTCGTAAAAACCCCAAGGACCGATCTCATCGTATGCCTATAATAA
CTCCAGCATATCATTGTATGAACTCTAGTTATAAGGTCTCTTTAGGTACT
CTTCAAGTTATGACAGAGCAGTTCCAGTGCGGTAACAGGATCTGTGAGGT
GAGAGCATACTTTGTAAGTTTTACCTCCATAGCTGCATAGGTTTGGGTAT
TGATGCTTCATCCTTAGCGATTTATGCCCAACGCAAGAAATTGAGCTGGG
CAAGGCGGACTGGAGTGCTCTGTTTGAGCATTATCCTTTCTTTGACGCAT
ATGAGAACTATCTGCAGGTTGATATTGTTGCAGCAGATGCTGATGATTTA
CTAACTTGGAAAGGGTGGGTGGAATCTCGGTTTATACAACTTACCCTAGA
AGTAAAAGACATTTCTTCGAAGTATTTTGTCAAAATGGGTTATACCACTG
CATTACAGCCATGGGTCCGAAGATTAATGATAGCTAGTCAAACTTTTCCC
TTCTTTTTGGGTTGGGCAAATTTCCTGGGCCTTTATTTAAATAAACAAGA
ACCAATGGGGTGCTGCAATGCCTTCTTATCCGATAATAAATTGACCCTCC
AACCTTGCCCATTTTGGCTTTTTTTGGGTTTGGGAAAAAAA
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