EY693174

Overview
NameEY693174
Unique NameEY693174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY693174 vs. ExPASy Swiss-Prot
Match: RL15_BRUPA (60S ribosomal protein L15 (Fragment) OS=Brugia pahangi PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.849e-17
Identity = 37/57 (64.91%), Postives = 49/57 (85.96%), Query Frame = 3 
Query:   42 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 212
            MGAY+Y+ ELWRKK+S+ MR+L R+RCW+YRQ  +I RV+RPTRP+KARRLGY + +
Sbjct:    1 MGAYRYMQELWRKKKSETMRYLLRIRCWQYRQLTAIHRVSRPTRPEKARRLGYLSNE 57
[Close]
BLAST of EY693174 vs. ExPASy Swiss-Prot
Match: RL15_BRANA (60S ribosomal protein L15 (Fragment) OS=Brassica napus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.462e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3 
Query:   96 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 212
            MRF+QRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ
Sbjct:    3 MRFVQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 41

HSP 2 Score: 21.1718 bits (43), Expect = 2.462e-14
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1 
Query:  268 PRVLYMVNRQTR 303
            P+VL MVN QTR
Sbjct:   60 PKVLCMVNPQTR 71
The following BLAST results are available for this feature:
BLAST of EY693174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL15_BRUPA6.849e-1764.9160S ribosomal protein L15 (Fragment) OS=Brugia pah... [more]
RL15_BRANA2.462e-1489.7460S ribosomal protein L15 (Fragment) OS=Brassica n... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-008-G02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693174 ID=EY693174; Name=EY693174; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCACAGCACAGGTGAGCTCGACGATCGAACAATGGGTGCA
TACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAG
GTTCTTGCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCACCCTTCCATCG
TCCGCGTCACCCGTCCCACTCGCCCCGACAAGGCTCGCCGCTTGGGCTAC
AAGGCCAAGCAGGGTTATGTCGTTTATCGTGTGCGTGTAAGACGTGGAGG
ACGAAAGAGACCAGTTCCCAAGGGTATTGTATATGGTAAACCGACAAACC
AGGGTGTCACTCAGCTTAAATTCCAGCGCAGCAAGCGTTCATTTGCTGAG
GAACGTGCCGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCAACTCATACTG
GATCAATGAGGATTCAACTTACAAGTACTTTGAGGTAATCCTGGTGGATG
CTGCCCACAATGCAATCCGCAATGACCCCAGGATCAACTGGATCTGTAAG
CCTGTCCACAAGCACAGGTAGCTTCGTGGACTCACTTCTGCTGGGAAGAG
TACAGAGGTCTCCGAGGAAAGGGCACTTGCACCACAGGCACGACCTTCAA
GAAGGGCAACCTGAAAAAGAACCAACTCTCTCGCTCAGGCGTTACCGTAA
ACTTCTGGATTGTTACTTTGGGGTTTTCACTTATCAACTAGTTTAATTGC
TGTTGAGTTTGACCTCCAAAACAGTGGTTTGGGCTACTTTTGCTGCTCAT
GGTTAATTTTGTTCCTTGGGGCAATGAAATTGGAATCCTATGGAATGTTT
CACCGATGAAACCTTCTAATTTGGGGGATCTTCCCGTCAAAAAAAAAAAA
AGGGGGGCGCTCAAAGGACCAACTACGACCCGGAATGGACG
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