EY693125

Overview
NameEY693125
Unique NameEY693125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length950
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_CHLTB (Methionyl-tRNA formyltransferase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=fmt PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.608e-27
Identity = 73/212 (34.43%), Postives = 115/212 (54.25%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPADDSKATLAPR 771
            +V+LG+PQ +  VL TL +A +       +  +VT+    + R  K++ SPV Q AL +  P   +  P +  + AFL+ LR  Q ++ I  AYG IL  + L+IP  G  N+H  LLP YRGAAP+QR + DG   +G ++      +D G +     + + + + A  L   L + G ELL++ L  I  G+  V+  P +++ ATLAP+
Sbjct:    5 VVYLGTPQFAATVLKTLLDAHT------HIVGVVTRADKPQKRSSKLISSPVKQLALSKNIP---LLQPIKTTDPAFLAQLREWQADVFIVVAYGVILKQELLDIPTYGCYNLHAGLLPAYRGAAPIQRCIMDGGVLSGNTVIRMDAGMDTGDIANVNYVAIGEDMTAGGLAEALAASGGELLLKTLQEIEAGT--VRHVPQNEAMATLAPK 205          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_CHLT2 (Methionyl-tRNA formyltransferase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=fmt PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.608e-27
Identity = 73/212 (34.43%), Postives = 115/212 (54.25%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPADDSKATLAPR 771
            +V+LG+PQ +  VL TL +A +       +  +VT+    + R  K++ SPV Q AL +  P   +  P +  + AFL+ LR  Q ++ I  AYG IL  + L+IP  G  N+H  LLP YRGAAP+QR + DG   +G ++      +D G +     + + + + A  L   L + G ELL++ L  I  G+  V+  P +++ ATLAP+
Sbjct:    5 VVYLGTPQFAATVLKTLLDAHT------HIVGVVTRADKPQKRSSKLISSPVKQLALSKNIP---LLQPIKTTDPAFLAQLREWQADVFIVVAYGVILKQELLDIPTYGCYNLHAGLLPAYRGAAPIQRCIMDGGVLSGNTVIRMDAGMDTGDIANVNYVAIGEDMTAGGLAEALAASGGELLLKTLQEIEAGT--VRHVPQNEAMATLAPK 205          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_ALHEH (Methionyl-tRNA formyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=fmt PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.608e-27
Identity = 81/212 (38.21%), Postives = 107/212 (50.47%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPADDSKATLAPR 771
            LVF G+P  +V  L  L  A   P       A+ TQP  R  RGR+  PSPV Q A  +G P   +  PE   +    + L  L P+L +  AYG ILP   L IP +G VN+H SLLP +RGAAP+QRA+  G  ETGV L      LD GPV+AR +  +  +     L   L +    LL   L  +L  + R+ AQP  ++    A +
Sbjct:    7 LVFAGTPDFAVPSLQALLEAGHRP------VAVYTQPDRRAGRGRRPRPSPVKQQAEAQGLP---VRQPESLRDPRAQAELAELAPDLMVVIAYGLILPQAVLQIPALGCVNLHASLLPRWRGAAPIQRAILAGDDETGVCLMRMEAGLDTGPVLARARCPIGPRETGGSLHDRLAALAGTLLHDRLDDLL--ADRLPAQPQPEAGVCYADK 207          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_RHOOB (Methionyl-tRNA formyltransferase OS=Rhodococcus opacus (strain B4) GN=fmt PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.712e-27
Identity = 81/204 (39.71%), Postives = 109/204 (53.43%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRA-LDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPAD 744
            +VF G+P+ +V  L+ L  +        +V A++T+P +   RGRKV+ SP+   A   G     + TPER  E  FL+ L  L P+     AYG +LP K L+IP  G VN+H SLLP +RGAAPVQ A+  G   TG S AF + A +D GPV       + D   A +LL  L   G+ LL   L  I DG+     QPA+
Sbjct:    3 IVFAGTPEPAVPSLERLIRSPRH-----DVVAVITRPDAVAGRGRKVVRSPIGALADSHGIE---VLTPERPTEPEFLARLTDLAPDCAPVVAYGALLPQKVLDIPAHGWVNLHFSLLPAWRGAAPVQAAIGAGDDMTGAS-AFRLEAGMDTGPVYGVVTERIRDTDTAGDLLGRLADSGAALLESVLDGIEDGAITAVPQPAE 197          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_LACSS (Methionyl-tRNA formyltransferase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=fmt PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.154e-27
Identity = 70/210 (33.33%), Postives = 116/210 (55.24%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPADDSKATLA 765
            +VF+G+PQ SV +L+ L          +++ A+VTQP  +  R + +  +PV + A+    P   +F PE+      L+++ ALQP+L +TAAYG  LP+K L    +  +N+H SLLP YRG AP+Q A+ +G  E G+++    + +DAG +I +  + ++       L   L   G +LL++ LP I+  +A     P D+ + T A
Sbjct:    4 IVFMGTPQFSVPILEALVAND------YQILAVVTQPDRKVGRKQVLQQTPVKEAAVRLDLP---VFQPEKLSGSPELADVIALQPDLIVTAAYGQFLPTKLLEAAKIAAINVHGSLLPKYRGGAPIQYAVLNGDSEIGITIMHMAKKMDAGDMIEQASIPIEATDDTGSLFDKLSYVGRDLLLKTLPGIIAQTA--PRTPQDEVQVTFA 202          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_ANAVT (Methionyl-tRNA formyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fmt PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.154e-27
Identity = 74/211 (35.07%), Postives = 112/211 (53.08%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA-FLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPADDSKATLA 765
            +VF G+P+ +V  L+ L          FEV A+VTQP  RR+RG K+ PSPV   A+    P   ++ PER  +D   L+ L+ L  +  +  AYG IL  K L++P +G VN+H S+LP YRGAAP+Q  L +G  ETG++       +D G ++ +    +     A ++   L   G +LLI  L  +      ++  P D++ AT A
Sbjct:    3 IVFFGTPEFAVPTLEKLLLNQE-----FEVLAVVTQPDKRRERGNKLTPSPVKNMAIAHDLP---VWQPERIKKDTETLNKLKQLDADAFVVVAYGQILSQKILDMPKLGCVNVHGSILPQYRGAAPIQWCLYNGETETGITTMLMDAGMDTGAMLLKATTPIGLLDNADDVAQRLSVIGGDLLIETLYKL--QQQEIQPIPQDNAAATYA 203          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_PORGI (Methionyl-tRNA formyltransferase OS=Porphyromonas gingivalis GN=fmt PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.037e-27
Identity = 70/193 (36.27%), Postives = 106/193 (54.92%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDG 714
            L+F+G+   +V  L  L       ++ ++V A+VT P     RG KV PS V  YA + G P   I  P+   E++FL  LR  QP L I  A+  +LP     +PPMGT+N+H SLLP+YRGAAP+  A++ G  ETGV+       +D G V+ +EK+ +  +    EL   + + G+ +L+  +   L+G
Sbjct:    8 LIFMGTADFAVPALRALV------ENGYQVKAVVTMPDKPMGRGHKVSPSMVKLYAQELGLP---ILQPDNLNEESFLDELRTYQPHLQIVVAF-RMLPRSVWQMPPMGTINLHGSLLPMYRGAAPINHAIRHGDTETGVTTFRLRHEIDTGEVLLQEKLPIGHEETFGELYERMATLGASVLVHTVDLFLEG 190          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_PORG3 (Methionyl-tRNA formyltransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=fmt PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.037e-27
Identity = 70/193 (36.27%), Postives = 106/193 (54.92%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDG 714
            L+F+G+   +V  L  L       ++ ++V A+VT P     RG KV PS V  YA + G P   I  P+   E++FL  LR  QP L I  A+  +LP     +PPMGT+N+H SLLP+YRGAAP+  A++ G  ETGV+       +D G V+ +EK+ +  +    EL   + + G+ +L+  +   L+G
Sbjct:    8 LIFMGTADFAVPALRALV------ENGYQVKAVVTMPDKPMGRGHKVSPSMVKLYAQELGLP---ILQPDNLNEESFLDELRTYQPHLQIVVAF-RMLPRSVWQMPPMGTINLHGSLLPMYRGAAPINHAIRHGDTETGVTTFRLRHEIDTGEVLLQEKLPIGHEETFGELYERMATLGASVLVHTVDLFLEG 190          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_PARL1 (Methionyl-tRNA formyltransferase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=fmt PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.037e-27
Identity = 73/203 (35.96%), Postives = 105/203 (51.72%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPAD 744
            L F+G+P  SV VL  +  A        EV A+ +QPP +  RG    PSPV ++A + G P   +FTP     +A      +L  ++ +  AYG ILP   L  P +G +N+H SLLP +RGAAP+QRA+  G  ETGV +      LD GPV+  E++ +     A  L   L   G+ L++R L ++  G      QP +
Sbjct:    3 LAFMGTPDFSVPVLAEILAAGH------EVVAVYSQPPRKAGRGMAEQPSPVHRFAEEHGIP---VFTPVSLKGEAEQQAFASLDLDVAVVVAYGLILPKPVLEAPRLGCLNLHASLLPRWRGAAPIQRAIMAGDAETGVMVMQMEEGLDTGPVLLAERVAIAPDETAGGLHDRLSHIGASLMVRALAALSRGGLAAAPQPEE 196          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_COXBU (Methionyl-tRNA formyltransferase OS=Coxiella burnetii GN=fmt PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.050e-26
Identity = 80/232 (34.48%), Postives = 118/232 (50.86%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPADDSKATLAPR*LLXSHGCPSMKKXAVXIIR 831
            +VF G+PQ +V  L  L       DS   V A+ TQP     RG+K++ SPV + A     P   I  P    ++     L A+  ++ +  AYG ILP K LN   +G VN+H SLLP +RGAAP+QRA+  G +ETG+S+      LD G V+A+    +  +  A +L   L   G++LL+  L  +  G   +K +  D++ AT A + +         +K AV I R
Sbjct:    5 IVFAGTPQFAVPTLRALI------DSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIP---IIQPFSLRDEVEQEKLIAMNADVMVVVAYGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGISIMQMNEGLDTGDVLAKSACVISSEDTAADLHDRLSLIGADLLLESLAKLEKGD--IKLEKQDEASATYASK-IQKQEALIDWRKSAVEIAR 224          
The following BLAST results are available for this feature:
BLAST of EY693125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FMT_CHLTB3.608e-2734.43Methionyl-tRNA formyltransferase OS=Chlamydia trac... [more]
FMT_CHLT23.608e-2734.43Methionyl-tRNA formyltransferase OS=Chlamydia trac... [more]
FMT_ALHEH3.608e-2738.21Methionyl-tRNA formyltransferase OS=Alkalilimnicol... [more]
FMT_RHOOB4.712e-2739.71Methionyl-tRNA formyltransferase OS=Rhodococcus op... [more]
FMT_LACSS6.154e-2733.33Methionyl-tRNA formyltransferase OS=Lactobacillus ... [more]
FMT_ANAVT6.154e-2735.07Methionyl-tRNA formyltransferase OS=Anabaena varia... [more]
FMT_PORGI8.037e-2736.27Methionyl-tRNA formyltransferase OS=Porphyromonas ... [more]
FMT_PORG38.037e-2736.27Methionyl-tRNA formyltransferase OS=Porphyromonas ... [more]
FMT_PARL18.037e-2735.96Methionyl-tRNA formyltransferase OS=Parvibaculum l... [more]
FMT_COXBU1.050e-2634.48Methionyl-tRNA formyltransferase OS=Coxiella burne... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-008-A11-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693125 ID=EY693125; Name=EY693125; organism=Citrus sinensis; type=EST; length=950bp
CCACGCGTCCGCGTTGAAGACGAAAAGACAAAAGAAATGAATTCTTCGTT
GATGATAAGACGTTTCTTCTGCTTCAAAGGCCCGGCAACATCATCAACAA
CACCTTCCGCTTTTTCTGTTTCGAGGAAAAAGCCCCTCGTCTTCTTGGGC
TCTCCTCAGGTGTCTGTCAATGTTCTTGACACTCTGTTCAACGCTTCTTC
CTCACCCGATTCCATTTTCGAGGTTGCAGCAATAGTTACTCAGCCTCCTT
CTAGAAGAGATAGAGGTAGAAAGGTGTTGCCTTCTCCAGTAGCGCAGTAT
GCTCTTGACAGAGGCTTTCCTGCTGACCTCATCTTCACGCCTGAAAGGGC
TGGTGAGGATGCTTTCTTGTCCAATTTAAGAGCTCTGCAGCCCGAACTTT
GCATTACAGCAGCTTATGGGAATATTTTACCAAGCAAATTCCTCAATATT
CCACCAATGGGTACTGTTAATATACACCCCAGTCTGCTGCCACTTTATCG
TGGTGCTGCTCCTGTTCAACGAGCATTGCAGGATGGAGCTAAAGAAACAG
GAGTATCACTGGCATTTTCCGTCCGAGCACTTGATGCTGGACCTGTCATT
GCCCGGGAGAAAATGGAAGTTGATGACCAAATTAAGGCACCAGAGTTACT
AGTATTGCTCTTTTCTGAAGGCTCTGAACTTCTTATACGTGAGCTTCCTT
CTATATTAGATGGGTCAGCTAGGGTGAAAGCACAACCTGCAGATGATTCT
AAAGCCACCTTGGCTCCAAGATAACTACTGANGAGTCATGGCTGTCCTTC
GATGAAGAAGNCTGCTGTCNTCATAATAAGGTCGGGGGCTTGCAGGGTGG
CAGAACCNAGCTAAAATGGCGGCGTGATGACAGAATGTCAGCAAGATCCG
AAACTAAGATATTACTACAGAGGTTGCCCACCATCGACCATGAGTAATGC
back to top