EY693125

Overview
NameEY693125
Unique NameEY693125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length950
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_RICRO (Methionyl-tRNA formyltransferase OS=Rickettsia rickettsii (strain Iowa) GN=fmt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.494e-22
Identity = 59/190 (31.05%), Postives = 101/190 (53.16%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSI 705
            ++F+G+P+ +V  L  L           EV A+ TQ P  + RG  +  SP+ Q A +   P   ++TP     D  ++ +  +  ++ +  AYG I+P   L     G +NIHPS LP +RGAAP+QR + +G +++ V +      LD G ++ +E  +++++I   EL     + G+ELLI+ L +I
Sbjct:    3 VIFMGTPEFAVPALKKLITHH-------EVKAVFTQQPKAKGRGLNLAKSPIHQLAFEHQIP---VYTPSTLRNDEIINLINKVNADIIVVIAYGFIVPKAILEAKKYGCLNIHPSDLPRHRGAAPLQRTIIEGDRKSSVCIMRMDTGLDTGDILMKEDFDLEERITLEELHNKCANLGAELLIKTLANI 182          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_RICPU (Methionyl-tRNA formyltransferase OS=Rickettsia peacockii (strain Rustic) GN=fmt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.494e-22
Identity = 59/190 (31.05%), Postives = 101/190 (53.16%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSI 705
            ++F+G+P+ +V  L  L           EV A+ TQ P  + RG  +  SP+ Q A +   P   ++TP     D  ++ +  +  ++ +  AYG I+P   L     G +NIHPS LP +RGAAP+QR + +G +++ V +      LD G ++ +E  +++++I   EL     + G+ELLI+ L +I
Sbjct:    3 VIFMGTPEFAVPALKKLITHH-------EVKAVFTQQPKAKGRGLNLAKSPIHQLAFEHQIP---VYTPSTLRNDEIINLINKVNADIIVVIAYGFIVPKAILEAKKYGCLNIHPSDLPRHRGAAPLQRTIIEGDRKSSVCIMRMDTGLDTGDILMKEDFDLEERITLEELHNKCANLGAELLIKTLANI 182          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_RICCN (Methionyl-tRNA formyltransferase OS=Rickettsia conorii GN=fmt PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.494e-22
Identity = 59/190 (31.05%), Postives = 101/190 (53.16%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSI 705
            ++F+G+P+ +V  L  L           EV A+ TQ P  + RG  +  SP+ Q A +   P   ++TP     D  ++ +  +  ++ +  AYG I+P   L     G +NIHPS LP +RGAAP+QR + +G +++ V +      LD G ++ +E  +++++I   EL     + G+ELLI+ L +I
Sbjct:    3 VIFMGTPEFAVPALKKLITHH-------EVKAVFTQQPKAKGRGLNLAKSPIHQLAFEHQIP---VYTPSTLRNDEIINLINKVNADIIVVIAYGFIVPKAILEAKKYGCLNIHPSDLPRHRGAAPLQRTIIEGDRKSSVCIMRMDTGLDTGDILMKEDFDLEERITLEELHNKCANLGAELLIKTLANI 182          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_RICAE (Methionyl-tRNA formyltransferase OS=Rickettsia africae (strain ESF-5) GN=fmt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.494e-22
Identity = 59/190 (31.05%), Postives = 101/190 (53.16%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSI 705
            ++F+G+P+ +V  L  L           EV A+ TQ P  + RG  +  SP+ Q A +   P   ++TP     D  ++ +  +  ++ +  AYG I+P   L     G +NIHPS LP +RGAAP+QR + +G +++ V +      LD G ++ +E  +++++I   EL     + G+ELLI+ L +I
Sbjct:    3 VIFMGTPEFAVPALKKLITHH-------EVKAVFTQQPKAKGRGLNLAKSPIHQLAFEHQIP---VYTPSTLRNDEIINLINKVNADIIVVIAYGFIVPKAILEAKKYGCLNIHPSDLPRHRGAAPLQRTIIEGDRKSSVCIMRMDTGLDTGDILMKEDFDLEERITLEELHNKCANLGAELLIKTLANI 182          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_RHOPA (Methionyl-tRNA formyltransferase OS=Rhodopseudomonas palustris GN=fmt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.494e-22
Identity = 68/203 (33.50%), Postives = 106/203 (52.22%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPAD 744
            LVF+G+P+ +V  L  L  A+   D    +AA+ T+ P    RG K+  + VA  A     P   + TP+    D  L+N RA + +  +  AYG ILP   L+ P +G  N+H SLLP +RGAAP+ RA+  G  ETGV +      LD G V   E++ + D +   ++   L   G++L++R + ++  G  ++  Q  D
Sbjct:    5 LVFMGTPEFAVPTLLAL--AAHGHD----IAAVYTREPKPAGRGMKLQETAVALAAHRLQAP---VLTPKTLRTDEALANFRAHEADAAVVVAYGMILPQAILDAPELGCYNLHGSLLPRWRGAAPLNRAIMAGDAETGVMVMKMDAGLDTGDVAMAERIAITDAMTVTDVHDQLARLGADLMVRAMAALERGGLQLTKQSED 198          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_NITWN (Methionyl-tRNA formyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=fmt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.494e-22
Identity = 67/209 (32.06%), Postives = 103/209 (49.28%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPADDSKATL 762
            L+F+G+P  +V  L  L           E+AA+ T+      RG K+ P+PVA+ A   G P   + TP+          LR+   +  +  AYG ILP   L+ P  G  N+H SLLP +RGAAP+ RA+  G  E+GV +      LD G V   E++ + D + A +L   L   G++L+ R + ++  G  R+  Q      +T+
Sbjct:    5 LIFMGTPDFAVPTLQQLVAHGH------EIAAVYTREARPAGRGMKLQPTPVAREAQRLGLP---VLTPKTLKTQESQDQLRSYGADAAVVVAYGLILPQAILDAPRYGCYNLHASLLPRWRGAAPINRAVMAGDAESGVMVMKIDAGLDTGDVAMAERVPITDAMTASDLHDTLAPLGADLMARAMDALERGELRLTKQSEQGVASTV 204          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_GLUOX (Methionyl-tRNA formyltransferase OS=Gluconobacter oxydans GN=fmt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.494e-22
Identity = 80/233 (34.33%), Postives = 109/233 (46.78%), Query Frame = 1
Query:  136 LVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED-AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPADDSKATLAPR*LLXSHGCPSMKKXAVXIIR 831
            L+F+G+P  SV  L  L +A        EV A+ TQPP    RG+ +  SPV + A   G     + TP R   D A      AL  +  + AAYG ILP   L+ P +G +NIH SLLP +RGA+P+Q A+  G  ++GVS+      LD G V+  E   +     A  L   L   G  L++R L      + + K  P  +   T A R L   HG     + A  I R
Sbjct:    3 LIFMGTPDFSVPALHALLDAGH------EVVAVYTQPPRPAGRGKALRRSPVHEAAEAAGIE---VRTPARVRRDTAEHEAFAALNADAAVVAAYGLILPKAMLDAPRLGCLNIHASLLPRWRGASPIQSAIVAGDSQSGVSIMQMDEGLDTGAVLLEEATPISATDTASTLHDRLSEIGGRLVVRAL------AEQPKPVPQPEDGVTYAER-LTRDHGRIDWTRSAAEIDR 219          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_CHRSD (Methionyl-tRNA formyltransferase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=fmt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.494e-22
Identity = 67/209 (32.06%), Postives = 101/209 (48.33%), Query Frame = 1
Query:  118 VSRKKPLVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPAD 744
            +S    +VF G+P  +   L  L       DS  +V A  TQP     RGRK+ PSPV   A + G P   +  P    +      L AL+ ++ +  AYG ILP   L+IP +G +N+H SLLP +RGAAP+QRA++ G   +GV++      LD G ++   +  +       EL   L   G E ++  L ++         QP++
Sbjct:    1 MSHSLRVVFAGTPDFAAASLLALL------DSRHQVVAAYTQPDRPAGRGRKLTPSPVKALAQEHGLP---VHQPTSLKDTDAQQTLAALEADVLVVVAYGLILPQAVLDIPRLGCLNVHASLLPRWRGAAPIQRAIEAGDTRSGVTIMQMDAGLDTGAMLLVRETPITATTTGGELHDRLAPLGGEAIVEALDALATDGLTATPQPSE 200          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_AZOPC (Methionyl-tRNA formyltransferase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=fmt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.494e-22
Identity = 68/219 (31.05%), Postives = 115/219 (52.51%), Query Frame = 1
Query:  127 KKPLVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLP-SPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPADD---SKATLAPR 771
            K  +VF+G+P  +V  LD L          + V  +VT P     + + +   SP+ QYAL    P   +  P++  +  FL +L+A   +L +  ++  +LP    N+P +GT N+H SLLP YRGAAP+  A+ +G KETGV+  F    +D G +IA+E + + +   A  +   L   G++L+++    IL G+ ++ +Q   +    K  +AP+
Sbjct:    5 KARIVFMGTPDFAVASLDALIGEG------YNVVGVVTIPDKSIGKHQSIPQFSPIKQYALSHEIP---LLQPKKLKDPDFLKSLKAWNTDLQVVVSF-RLLPEVVWNMPSLGTFNLHASLLPQYRGAAPINWAIINGEKETGVTTFFLDYEIDTGKIIAQECIPIKETDNAGTIHDELMYLGAKLVVKTTNDILSGTVKLISQDETNLGKQKLKIAPK 213          
BLAST of EY693125 vs. ExPASy Swiss-Prot
Match: FMT_VIBVU (Methionyl-tRNA formyltransferase OS=Vibrio vulnificus GN=fmt PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.564e-22
Identity = 68/218 (31.19%), Postives = 107/218 (49.08%), Query Frame = 1
Query:  118 VSRKKPLVFLGSPQVSVNVLDTLFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPADDSKATLAPR 771
            +S+   +VF G+P  +   L  L ++        EV A+ TQP     RG+K+  SPV   AL+   P   ++ PE    D     L  L  ++ +  AYG +LP   L+ P +G +N+H S+LP +RGAAP+QR++  G  ETGV++      LD G ++    + +D    +  +   L   G  +L+  L  I  G+A    Q  DD +A  A +
Sbjct:    1 MSKPLRIVFAGTPDFAAQHLAALLSSEH------EVIAVYTQPDRPAGRGKKLTASPVKTIALEHNIP---VYQPENFKSDEAKQALADLNADIMVVVAYGLLLPQAVLDTPKLGCINVHGSILPRWRGAAPIQRSIWAGDAETGVTIMQMDIGLDTGDMLKIATLPIDASDTSATMYDKLAKLGPVVLVECLADIAAGTAIAIKQ--DDERANYAKK 207          
The following BLAST results are available for this feature:
BLAST of EY693125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FMT_RICRO3.494e-2231.05Methionyl-tRNA formyltransferase OS=Rickettsia ric... [more]
FMT_RICPU3.494e-2231.05Methionyl-tRNA formyltransferase OS=Rickettsia pea... [more]
FMT_RICCN3.494e-2231.05Methionyl-tRNA formyltransferase OS=Rickettsia con... [more]
FMT_RICAE3.494e-2231.05Methionyl-tRNA formyltransferase OS=Rickettsia afr... [more]
FMT_RHOPA3.494e-2233.50Methionyl-tRNA formyltransferase OS=Rhodopseudomon... [more]
FMT_NITWN3.494e-2232.06Methionyl-tRNA formyltransferase OS=Nitrobacter wi... [more]
FMT_GLUOX3.494e-2234.33Methionyl-tRNA formyltransferase OS=Gluconobacter ... [more]
FMT_CHRSD3.494e-2232.06Methionyl-tRNA formyltransferase OS=Chromohalobact... [more]
FMT_AZOPC3.494e-2231.05Methionyl-tRNA formyltransferase OS=Azobacteroides... [more]
FMT_VIBVU4.564e-2231.19Methionyl-tRNA formyltransferase OS=Vibrio vulnifi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-008-A11-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693125 ID=EY693125; Name=EY693125; organism=Citrus sinensis; type=EST; length=950bp
CCACGCGTCCGCGTTGAAGACGAAAAGACAAAAGAAATGAATTCTTCGTT
GATGATAAGACGTTTCTTCTGCTTCAAAGGCCCGGCAACATCATCAACAA
CACCTTCCGCTTTTTCTGTTTCGAGGAAAAAGCCCCTCGTCTTCTTGGGC
TCTCCTCAGGTGTCTGTCAATGTTCTTGACACTCTGTTCAACGCTTCTTC
CTCACCCGATTCCATTTTCGAGGTTGCAGCAATAGTTACTCAGCCTCCTT
CTAGAAGAGATAGAGGTAGAAAGGTGTTGCCTTCTCCAGTAGCGCAGTAT
GCTCTTGACAGAGGCTTTCCTGCTGACCTCATCTTCACGCCTGAAAGGGC
TGGTGAGGATGCTTTCTTGTCCAATTTAAGAGCTCTGCAGCCCGAACTTT
GCATTACAGCAGCTTATGGGAATATTTTACCAAGCAAATTCCTCAATATT
CCACCAATGGGTACTGTTAATATACACCCCAGTCTGCTGCCACTTTATCG
TGGTGCTGCTCCTGTTCAACGAGCATTGCAGGATGGAGCTAAAGAAACAG
GAGTATCACTGGCATTTTCCGTCCGAGCACTTGATGCTGGACCTGTCATT
GCCCGGGAGAAAATGGAAGTTGATGACCAAATTAAGGCACCAGAGTTACT
AGTATTGCTCTTTTCTGAAGGCTCTGAACTTCTTATACGTGAGCTTCCTT
CTATATTAGATGGGTCAGCTAGGGTGAAAGCACAACCTGCAGATGATTCT
AAAGCCACCTTGGCTCCAAGATAACTACTGANGAGTCATGGCTGTCCTTC
GATGAAGAAGNCTGCTGTCNTCATAATAAGGTCGGGGGCTTGCAGGGTGG
CAGAACCNAGCTAAAATGGCGGCGTGATGACAGAATGTCAGCAAGATCCG
AAACTAAGATATTACTACAGAGGTTGCCCACCATCGACCATGAGTAATGC
back to top