EY693107

Overview
NameEY693107
Unique NameEY693107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693107 vs. ExPASy Swiss-Prot
Match: RF1_AERPE (Peptide chain release factor subunit 1 OS=Aeropyrum pernix GN=prf1 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.558e-21
Identity = 62/193 (32.12%), Postives = 102/193 (52.85%), Query Frame = 1
Query:  166 MSDGQETDK-NIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLX*VTVDLPXKHGRGGQSALRFARL 741
            MS G+  ++  I   ++ +L+K L+      T ++SL +PP   +S V  +L  E+    NIK +  RQ+V  A+++A  RL++    PPNGLVL+ G  ++     K     F P +PI    Y  D +F T+ L +++E ++  G I+++ +    G L G   EVL  +   +P KH  GGQS  R+ R+
Sbjct:    1 MSQGRLEERLTISKRELARLLKELKKWSAPATVLLSLYIPPGRPLSDVMTLLRQEYSITDNIKLKRTRQAVKRALSAAMDRLQMLTSTPPNGLVLFCGEDMSTG---KFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNNAIGIIIVERDQATIGLLKGARLEVLKELEGFVPGKHKMGGQSQRRYERI 190          
BLAST of EY693107 vs. ExPASy Swiss-Prot
Match: RF1_PYRAE (Peptide chain release factor subunit 1 OS=Pyrobaculum aerophilum GN=prf1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.915e-19
Identity = 56/177 (31.64%), Postives = 87/177 (49.15%), Query Frame = 1
Query:  208 KIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLX*VTVDLPXKHGRGGQSALRFAR 738
            +++  +  L+  +G  T++I+L +     I  V  +L  E+ TA+NIK +  R  V   +      LK   K P NG+ ++ G  +   G  + V     P +PIN   Y+CD  FHTE L + L +   +G +V++    +   L G   EV+  V   +P KH  GGQSA RF R
Sbjct:   18 ELRAFVNLLKKFKGYATTLITLYINAERPIPDVVNLLRSEWSTAANIKDKTTRTHVQDTLERIINNLKGEAKAPENGMAVFAGFHMINQGNYEWVYYVVIPPQPINTFKYICDTAFHTELLEDQLHAGVVYGIVVIERGEAVIALLKGGQWEVVKSVEFFVPGKHHAGGQSANRFKR 194          
BLAST of EY693107 vs. ExPASy Swiss-Prot
Match: RF1_SULSO (Peptide chain release factor subunit 1 OS=Sulfolobus solfataricus GN=prf1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.266e-19
Identity = 62/179 (34.64%), Postives = 91/179 (50.84%), Query Frame = 1
Query:  208 KIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTG-TVVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLX*VTVDLPXKHGRGGQSALRFARL 741
            ++K LIK L+  +   T ++SL +PP   I  V  +L  E+  A NIK +  R +VL+AI +A  RL    K+  NGLVL+ G    TED K       F P   +    Y  D +FH E L +++E    +G I+++ +    G L G   E+L  +   +P KH  GGQS  R  R+
Sbjct:   12 ELKALIKELKKWKAPATVLLSLYIPPGRPIPDVVNLLRQEYSIAQNIKLKRTRDAVLSAIGAAIDRLNKIPKIDGNGLVLFCGENFDTEDFK----CFMFSPPDKVPLFFYRTDKEFHLEFLEDMVEDTAVYGLIIVERDEATIGLLKGARIEILEEIEGFVPGKHMMGGQSQRRIDRI 186          
The following BLAST results are available for this feature:
BLAST of EY693107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RF1_AERPE4.558e-2132.12Peptide chain release factor subunit 1 OS=Aeropyru... [more]
RF1_PYRAE1.915e-1931.64Peptide chain release factor subunit 1 OS=Pyrobacu... [more]
RF1_SULSO4.266e-1934.64Peptide chain release factor subunit 1 OS=Sulfolob... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-007-H04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693107 ID=EY693107; Name=EY693107; organism=Citrus sinensis; type=EST; length=887bp
CCACGCGTCCGGCGACGGGATTCTTCTCCTTTAGAGATTTGTCATTGGAG
GTCTTTCTTGAAGGAAGGAGAGTGACAGAAGCCGACTTTTGCTGCTGCGC
CGTCGCCGATTACCTCTCTCATCTAGAGTATATCACAGTTTCTGCAGTTT
CAACCAGTACCCACAATGTCAGATGGTCAGGAAACCGATAAGAACATAGA
GATATGGAAAATCAAAAAATTGATCAAGGCACTGGAATCTGCAAGAGGTA
ATGGAACCAGTATGATATCCCTTATTATGCCTCCACGTGATCAAATTTCT
CGGGTCACAAAGATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAA
AAGTAGGGTCAACCGTCAGTCTGTTCTGGCTGCTATTACTTCTGCTCAGC
AGAGGCTGAAGCTATATAACAAGGTTCCTCCCAATGGGCTGGTGCTTTAT
ACTGGAACAGTTGTTACTGAGGATGGCAAGGAAAAGAAAGTGACAATTGA
CTTTGAACCTTTCAAGCCTATTAATGCATCGTTGTATCTCTGTGATAACA
AGTTTCACACTGAAGCCTTGAATGAACTCTTAGAATCTGATGATAAATTT
GGGTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCACATTAAGTGG
AAACACNAGAGAGGTGCTTNCATAAGTTACTGTTGATCTGCCGAANAAGC
ATGGAAGAGGAGGGCAGTCAGCTCTTCGTTTTGCTCGTCTTCGGATGGAG
AAACGCACACTATGTGAGGAAGAAGCAGAGCTTGCTACACAGTCTTATCA
ATCTGCTNACAGTCAGCAATGGTCTGGATTAANTCTGCTGGGTCTGCTGA
TTCAAACGAGCTGAGCAGTCTGATATGTTGTCCTCGT
back to top