EY693083

Overview
NameEY693083
Unique NameEY693083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693083 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.319e-18
Identity = 56/178 (31.46%), Postives = 82/178 (46.07%), Query Frame = 3
Query:  135 GSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS---DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLKHQTFLH*SSTI-IKSAIWFWM 656
            G G   G    G G+ G  +  +++   F  +   +    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +CYI +++  +   D            +YYGRGP+Q++WN NY   G  +G + L     +   + I  K+A+WFWM
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGI-KNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          
BLAST of EY693083 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.487e-17
Identity = 58/187 (31.02%), Postives = 82/187 (43.85%), Query Frame = 3
Query:  111 QGGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLKHQTFLH*SSTI-IKSAIWFWM 656
            Q G     G  A  G      G   G   + +  E F + +  +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                CYI +++  +           P Q    YYGRGP+Q++WN NY   G+ +G D L+    +    TI  K+A+WFWM
Sbjct:   56 QSGPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229          
BLAST of EY693083 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.750e-16
Identity = 59/182 (32.42%), Postives = 81/182 (44.51%), Query Frame = 3
Query:  135 GSGAVCGERDTGHGTDGGELG---KIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLKHQTFLH*SSTI-IKSAIWFWM 656
            G G   G    G G  GG  G   + +  E F + +  +    C  + FYT  +F+ AA ++  F         KREIAAFFA   HET                CYI +++  S           P Q    YYGRGP+Q++WN NY   G+ +G D L+    +    TI  K+A+WFWM
Sbjct:   64 GGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM 232          
BLAST of EY693083 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 8.001e-16
Identity = 59/183 (32.24%), Postives = 83/183 (45.36%), Query Frame = 3
Query:  114 GGSAQNCGSGAVCGER-DTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLKHQTFLH*SSTI-IKSAIWFWM 656
            G S   CG G   G   D   G     +  I+++E F D +  +    C  + FYT   F+EA  A+P FG    +  RKREIAA+FA   HET           +A  YC   Q    +             +Y+GRGP+QL+WN NY+  G+ L  D L     +     I  K+++WFW+
Sbjct:   19 GNSYDYCGPGCQAGPCWDPCEGDGTLTVSDIVTQE-FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNK----------EYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          
BLAST of EY693083 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.040e-15
Identity = 60/187 (32.09%), Postives = 80/187 (42.78%), Query Frame = 3
Query:  114 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS-DXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVD-LLKHQTFLH*SSTIIKSAIWFWM 656
            G     CG+G   G   T        +   I    F + +  + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +CYI ++   S D          P      Y+GRGPIQL+WN NY   G A   D L   +T  +      K+A+W+WM
Sbjct:   41 GTGEDYCGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          
The following BLAST results are available for this feature:
BLAST of EY693083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIA_MAIZE1.319e-1831.46Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_ORYSJ2.487e-1731.02Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ2.750e-1632.42Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA8.001e-1632.24Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_PHAVU3.040e-1532.09Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-007-F01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693083 ID=EY693083; Name=EY693083; organism=Citrus sinensis; type=EST; length=927bp
TCCGACCCACGCGTCCGCCCACGCGTCCGATAATTGATATCATAACTCTT
GCTTTCAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCTAGTTTT
ATCTTTTGTACAAGGAGGTTCAGCACAGAATTGTGGAAGCGGCGCTGTGT
GCGGTGAACGTGATACTGGCCACGGGACGGATGGCGGTGAACTGGGCAAG
ATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGA
ACGATGCCATGCCAGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAG
CCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAA
AGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGG
ATGGCCCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCTATATTA
GGCAAGTTAGCCATGGGTCCGACTACTGTTATCCTTACTGTCCATGTCCC
TTGCCAGGGCAATACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTG
CAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAAACATC
AGACCTTCTTGCACTGATCCAGTACTATCATCAAGTCAGCAATCTGGTTC
TGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGA
CGAATGAAACCATCAGNCAATGACGTAAACGCCAGGCGGCTTTCGGGATA
CNGTCTAACCACAATANTAATCACGNTGGAATTGAAATGTGCCAAAGGTG
AATGCTTTTTAGCTAACGTATTGGTTCTTAACACCTTCTGTGGCAGTTGG
NATCANNCTGCGACATCTTGATGCTACACCAGGNCTTTATGCCCTATTTG
ATGCCAATCATGGATCATCTGACNACT
back to top