EY693079

Overview
NameEY693079
Unique NameEY693079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: LCB2_KLULA (Serine palmitoyltransferase 2 OS=Kluyveromyces lactis GN=LCB2 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.328e-18
Identity = 62/209 (29.67%), Postives = 96/209 (45.93%), Query Frame = 1
Query:   79 LLFSGNDYLGLS-SHPTIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLL----------SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAE 672
            L  S  +YLG + S      AA  A  ++G+   G     G T+ H + E  +A    KED +L   G+  N              A    SF D K  + SD+LNH SI  G+R++       V  +KH DM  L+ L+          +    +K ++  + L+SM+G  A + +LV+L++KY   L +D+AH     G +G GV +
Sbjct:  157 LNLSSYNYLGFAQSEGQCTTAALEATDKYGVYSGGPRTRIGTTDLHVMTEKYVAQFVGKEDAILFSMGYGTN--------------ANFFNSFLDSKCLVISDSLNHTSIRTGVRLSGAA----VKTFKHNDMRALEKLIREQIVQGQSKTHRPWKKIIICVEGLYSMEGTMANLPKLVELKKKYKCYLFVDEAHSIGAMGPSGRGVCD 347          

HSP 2 Score: 27.7202 bits (60), Expect = 9.328e-18
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 2
Query:  689 NVDICVGTLSKAAGCQGGFMHAAK 760
            ++DI +GTL+K+ G  GG++ A K
Sbjct:  355 DIDIMMGTLTKSFGAAGGYIAADK 378          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: BIOF_SERMA (8-amino-7-oxononanoate synthase OS=Serratia marcescens GN=bioF PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.228e-16
Identity = 69/195 (35.38%), Postives = 98/195 (50.26%), Query Frame = 1
Query:   79 LLFSGNDYLGLSSHPTIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG 663
            L FSGNDYLGLS    +  A  + A+ +G+G  GS  + G++  H+ LE  LA        LL    +AAN AV+ A+     +  GD          I +D L+HAS+++    A   +   V       ++ +     C   R  + VT+ LFSMDGD AP+ EL +L R  G  L++DDAHG  V G+ G G
Sbjct:   42 LNFSGNDYLGLSQDARVIAAWQQGAR-YGVGNGGSGHVTGFSAAHQALEEQLAAWLGYPRALLF-ISYAANQAVLAAL-----MQKGDR---------ILADRLSHASLLEAAG-AVAGRRAPVPAQSTAGLARICLAKPCDGQR--LAVTEGLFSMDGDGAPLAELHRLTRAAGAWLMVDDAHGIGVRGEQGRG 217          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: LCB2_YEAST (Serine palmitoyltransferase 2 OS=Saccharomyces cerevisiae GN=LCB2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.879e-15
Identity = 59/206 (28.64%), Postives = 91/206 (44.17%), Query Frame = 1
Query:   88 SGNDYLGLS-SHPTIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLL----------SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAE 672
            S  +YLG + S      AA  +  ++ +   G     G T+ H   E  +A    KED L+   G+  N  +  A              F D+K  + SD LNH SI  G+R++       V  +KH DM  L+ L+          +    +K ++  + LFSM+G    + +LV+L++KY   L +D+AH     G  G GV E
Sbjct:  161 SSYNYLGFAQSKGQCTDAALESVDKYSIQSGGPRAQIGTTDLHIKAEKLVARFIGKEDALVFSMGYGTNANLFNA--------------FLDKKCLVISDELNHTSIRTGVRLSGAA----VRTFKHGDMVGLEKLIREQIVLGQPKTNRPWKKILICAEGLFSMEGTLCNLPKLVELKKKYKCYLFIDEAHSIGAMGPTGRGVCE 348          

HSP 2 Score: 27.335 bits (59), Expect = 3.879e-15
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 2
Query:  686 KNVDICVGTLSKAAGCQGGFMHA 754
            K+VDI +GT +K+ G  GG++ A
Sbjct:  355 KDVDILMGTFTKSFGAAGGYIAA 377          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: SPTC2_HUMAN (Serine palmitoyltransferase 2 OS=Homo sapiens GN=SPTLC2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.041e-15
Identity = 58/213 (27.23%), Postives = 98/213 (46.01%), Query Frame = 1
Query:   70 KRLLLFSGNDYLGLSSHP-TIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTM----------RKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEH 675
            K ++     +YLG + +  +  +AAA+  +E+G G   +    G  + H  LE  +A     E  +    GFA N   I A+     L              I SD LNHAS++ G R++  T    + ++KH +M  L+ LL    +          +K +++ + ++SM+G    + E++ L++KY   L LD+AH     G  G GV E+
Sbjct:  168 KGVINMGSYNYLGFARNTGSCQEAAAKVLEEYGAGVCSTRQEIGNLDKHEELEELVARFLGVEAAMAYGMGFATNSMNIPALVGKGCL--------------ILSDELNHASLVLGARLSGAT----IRIFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPTGRGVVEY 362          

HSP 2 Score: 25.7942 bits (55), Expect = 5.041e-15
Identity = 9/25 (36.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  686 KNVDICVGTLSKAAGCQGGFMHAAK 760
            ++VD+ +GT +K+ G  GG++   K
Sbjct:  368 EDVDVMMGTFTKSFGASGGYIGGKK 392          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: SPTC2_CRIGR (Serine palmitoyltransferase 2 OS=Cricetulus griseus GN=SPTLC2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.437e-14
Identity = 57/213 (26.76%), Postives = 98/213 (46.01%), Query Frame = 1
Query:   70 KRLLLFSGNDYLGLSSHP-TIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTM----------RKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEH 675
            K ++     +YLG + +  +  +AAA   +E+G G   +    G  + H  LE  +A     E  +    GFA N   I A+     L              I SD LNHAS++ G R++  T    + ++KH +M  L+ LL    +          +K +++ + ++SM+G    + E++ L++KY   L LD+AH     G +G GV ++
Sbjct:  166 KGVINMGSYNYLGFARNTGSCQEAAAEVLKEYGAGVCSTRQEIGNLDKHEELEKLVARFLGVEAAMTYGMGFATNSMNIPALVGKGCL--------------ILSDELNHASLVLGARLSGAT----IRIFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPSGRGVVDY 360          

HSP 2 Score: 26.1794 bits (56), Expect = 1.437e-14
Identity = 16/66 (24.24%), Postives = 30/66 (45.45%), Query Frame = 2
Query:  686 KNVDICVGTLSKAAGCQGGFMHAAKV----XRNHTI*RPLFYIFTAIPIPMQLLTCCXYCVNKKHG 871
            ++VD+ +GT +K+ G  GG++   K      R H+      Y  +  P  M+ +     C+  + G
Sbjct:  366 EDVDVMMGTFTKSFGASGGYIGGKKALIDYLRTHS--HSAVYATSMSPPVMEQIITSMKCIMGQDG 429          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: SPTC2_MOUSE (Serine palmitoyltransferase 2 OS=Mus musculus GN=Sptlc2 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.867e-14
Identity = 57/213 (26.76%), Postives = 98/213 (46.01%), Query Frame = 1
Query:   70 KRLLLFSGNDYLGLSSHP-TIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTM----------RKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEH 675
            K ++     +YLG + +  +  +AAA   +E+G G   +    G  + H  LE  +A     E  +    GFA N   I A+     L              I SD LNHAS++ G R++  T    + ++KH +M  L+ LL    +          +K +++ + ++SM+G    + E++ L++KY   L LD+AH     G +G GV ++
Sbjct:  166 KGVINMGSYNYLGFARNTGSCQEAAAEVLKEYGAGVCSTRQEIGNLDKHEELEKLVARFLGVEAAMTYGMGFATNSMNIPALVGKGCL--------------ILSDELNHASLVLGARLSGAT----IRIFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPSGRGVVDY 360          

HSP 2 Score: 25.7942 bits (55), Expect = 1.867e-14
Identity = 9/25 (36.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  686 KNVDICVGTLSKAAGCQGGFMHAAK 760
            ++VD+ +GT +K+ G  GG++   K
Sbjct:  366 EDVDVMMGTFTKSFGASGGYIGGKK 390          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: SPTC1_DICDI (Serine palmitoyltransferase 1 OS=Dictyostelium discoideum GN=sptA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 49/212 (23.11%), Postives = 94/212 (44.34%), Query Frame = 1
Query:   70 KRLLLFSGNDYLGLSSHPTIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLL-------SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEHLTV 684
            K+ L  + ++YLGL ++P I K +  A +++G+G  G     G  + H  LE   A   K  + +L  + +A   + I +   I  ++  D                    +   +++        ++ + H DM  L+ +L       S   + +K VV + L+   G  AP+ +++K + +Y F L++D++H   V G  G G+ EH  +
Sbjct:  100 KKYLNLARSNYLGLINNPEINKISENAIRKYGVGSCGPRGFYGTIDVHLDLEKKTASFMKTPEAVLYSSAYATISSAIPSFSKIGDIIIVDR------------------GVSQPVQVGVSLSRSRIYYFNHNDMDDLQRVLEQTQFKGSKAKIVRKFVVIEGLYYNSGTIAPLPQILKFKEQYKFRLIMDESHSVGVLGSTGRGLTEHYNI 293          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: SPTC2_DICDI (Serine palmitoyltransferase 2 OS=Dictyostelium discoideum GN=sptB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.563e-13
Identity = 55/219 (25.11%), Postives = 102/219 (46.58%), Query Frame = 1
Query:   52 TFARQFKRLLLFSGNDYLGLSSHP-TIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKK----------VVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEH 675
            T  +  K L L S N YLG + +   +A     +  ++G+    ++   G +   R LE+  A    KED ++   GFA N   + A+     L              I SD+LNHAS+  G +        +V V++H D  HL+ ++    ++ +          +++ + ++SM+G+ A + E++ +++KY   L +D+AH     GK G G+ ++
Sbjct:  105 TGGKTIKCLNLGSYN-YLGFAQNEGPVADKVIDSIYKYGVYTGSTSAEVGLSEPQRDLENLTARFVGKEDAIVFEMGFATNSGTLPALIGKGGL--------------IISDSLNHASLATGCK----NTGCKVKVFRHNDSKHLEEVIRESIIQGQPRTHRPWTMILIIIEGIYSMEGEVANLPEILAIKKKYKCYLYIDEAHSIGALGKTGRGIVDY 304          

HSP 2 Score: 26.5646 bits (57), Expect = 2.563e-13
Identity = 11/30 (36.67%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  686 KNVDICVGTLSKAAGCQGGFMHAAKVXRNH 775
            K +DI +GT +K+ G  GG++ + K   +H
Sbjct:  310 KEIDILMGTYTKSFGAIGGYVASDKSLIDH 339          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: CQSA_VIBCH (CAI-1 autoinducer synthase OS=Vibrio cholerae GN=cqsA PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.831e-13
Identity = 55/209 (26.32%), Postives = 97/209 (46.41%), Query Frame = 1
Query:   79 LLFSGNDYLGLSSHPTIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG-VAEHLTVKECRYM 702
            ++   NDYL L++HP I    A++  E       SA          ++E  LA     ++CLL  +G+ AN+ ++              ++       ++ D   H S+ +G R A        F++ +CD  HL+ L+        ++V DS++S  G  AP+ ELV + +++G  L++D++H     G NG G +AE    +E  +M
Sbjct:   42 IILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLL--------------QTICQPNTNVYIDFFAHMSLWEGARYANA--QAHPFMHNNCD--HLRMLIQ--RHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFM 230          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: LCB1_YEAST (Serine palmitoyltransferase 1 OS=Saccharomyces cerevisiae GN=LCB1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.317e-13
Identity = 52/217 (23.96%), Postives = 97/217 (44.70%), Query Frame = 1
Query:   64 QFKRLLLFSGNDYLGLSSHPTIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKV----------VVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEHLTV 684
            ++  +   + N++L LS+   + +      + +G+G  G A   G  + H  LE  LA     +  +L    F A  +V+ A      ++  D++                  + + ++++  T    V+ + H DM+ L+ LL+  T ++K+          +VT+ +F   GD AP+ EL KL+ KY F L +D+     V G  G G++EH  +
Sbjct:  143 KYTNVFNLASNNFLQLSATEPVKEVVKTTIKNYGVGACGPAGFYGNQDVHYTLEYDLAQFFGTQGSVLYGQDFCAAPSVLPAFTKRGDVIVADDQV--------------SLPVQNALQLSRST----VYYFNHNDMNSLECLLNELTEQEKLEKLPAIPRKFIVTEGIFHNSGDLAPLPELTKLKNKYKFRLFVDETFSIGVLGATGRGLSEHFNM 341          

HSP 2 Score: 24.6386 bits (52), Expect = 3.317e-13
Identity = 14/40 (35.00%), Postives = 20/40 (50.00%), Query Frame = 2
Query:  692 VDICVGTLSKAAGCQGGFMHAAKVXRNHTI*RPLFYIFTA 811
            +DI VG+++ A G  GGF+    V   H       Y F+A
Sbjct:  347 IDITVGSMATALGSTGGFVLGDSVMCLHQRIGSNAYCFSA 386          
The following BLAST results are available for this feature:
BLAST of EY693079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
LCB2_KLULA9.328e-1829.67Serine palmitoyltransferase 2 OS=Kluyveromyces lac... [more]
BIOF_SERMA1.228e-1635.388-amino-7-oxononanoate synthase OS=Serratia marces... [more]
LCB2_YEAST3.879e-1528.64Serine palmitoyltransferase 2 OS=Saccharomyces cer... [more]
SPTC2_HUMAN5.041e-1527.23Serine palmitoyltransferase 2 OS=Homo sapiens GN=S... [more]
SPTC2_CRIGR1.437e-1426.76Serine palmitoyltransferase 2 OS=Cricetulus griseu... [more]
SPTC2_MOUSE1.867e-1426.76Serine palmitoyltransferase 2 OS=Mus musculus GN=S... [more]
SPTC1_DICDI1.660e-1323.11Serine palmitoyltransferase 1 OS=Dictyostelium dis... [more]
SPTC2_DICDI2.563e-1325.11Serine palmitoyltransferase 2 OS=Dictyostelium dis... [more]
CQSA_VIBCH2.831e-1326.32CAI-1 autoinducer synthase OS=Vibrio cholerae GN=c... [more]
LCB1_YEAST3.317e-1323.96Serine palmitoyltransferase 1 OS=Saccharomyces cer... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-007-E09-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693079 ID=EY693079; Name=EY693079; organism=Citrus sinensis; type=EST; length=922bp
CCACGCGTCCGGATTATTTGCGGAGATGGTCTAGCAAATGATAAGACTAC
AACTTTTGCTAGGCAGTTCAAGAGGCTGCTATTGTTCTCTGGAAATGATT
ATTTGGGCTTGAGTTCGCATCCCACTATTGCAAAGGCTGCTGCGAGGGCA
GCGCAAGAGCACGGAATGGGCCCAAGGGGTTCTGCTTTAATCTGCGGTTA
CACCAATTACCATAGGTTACTAGAGTCATGCTTGGCGGATTTAAAGAAGA
AGGAGGATTGTCTTCTCTGTCCCACAGGCTTTGCAGCCAATATGGCTGTG
ATTGTAGCAGTTGGAAACATTGCCTCTCTCCTAGCTGGAGATGAAAAATC
TTTTAAAGATGAAAAAATTGCCATATTTTCTGATGCACTAAACCATGCAT
CAATAATTGATGGTATTCGTATTGCTGAGCGGACTAAAATGGTTGAAGTT
TTTGTATATAAACACTGTGACATGTCCCACCTCAAGACACTGTTATCATG
TTGCACGATGAGGAAAAAAGTTGTTGTAACGGACAGCTTGTTCAGTATGG
ATGGAGACTTTGCACCAATGGTTGAACTTGTGAAGCTTCGCAGGAAGTAT
GGCTTTCTGCTTGTCCTAGATGATGCTCATGGGACCTTTGTTTGTGGAAA
AAACGGTGGGGGAGTGGCTGAACATTTAACTGTGAAAGAATGTAGATATA
TGTGTTGGCACTCTGAGTAAAGCGGCAGGGTGTCAGGGTGGCTTCATGCA
TGCAGCAAAAGTGGNAAGAAATCATACNATCTAGAGGCCGCTCTTTTATA
TTTTCACAGCCATACCGATCCCCATGCAGCTGCTGACATGCTGCTNGTAT
TGTGTCAATAAGAAACATGGCGTAAAAGGCATTTTGGAACATGTGCATAC
TCCATGGTCTACTGGAATCCCA
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