EY693079

Overview
NameEY693079
Unique NameEY693079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: BIKB_HELPJ (Putative 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase OS=Helicobacter pylori J99 GN=jhp_0545 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.405e-12
Identity = 63/204 (30.88%), Postives = 92/204 (45.10%), Query Frame = 1
Query:   85 FSGNDYLGLSSHPTIAKAAARAAQEHGM-GPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRK-KVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEHLTVKE 690
            ++ NDYLGLS    + + A    Q      P+ S L+ GY   H  LE  LADL + E  LL  +GF  N+A+      I +LL         +   +F DA  HAS I   +I    K  +V  + H D+  LK  L      K K +  + ++SMD   AP      ++      L++D+AH     G+N  G  E+  +KE
Sbjct:   28 YASNDYLGLSVKKDLLQNAFDKLQSFDCHSPKASMLVNGYHPLHAELEERLADLLEFESALLVGSGFLGNLAL------IDTLLV--------KNALLFMDAHYHASGIFSTKI----KPNQVIFFSHNDIKDLKQKLFNAPKNKLKFIAIEGVYSMDASIAPYDFYEIIQETPNAFLIVDEAHSFGTIGENLLGFLEYHRIKE 213          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: CQSA_VIBHB (CAI-1 autoinducer synthase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=cqsA PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.339e-12
Identity = 53/204 (25.98%), Postives = 95/204 (46.57%), Query Frame = 1
Query:   79 LLFSGNDYLGLSSHPTIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEHLTVKE 690
            ++   NDYL LS +  I +A   A  EH      SA+     +     E+ LA+      CLL  +G+AAN+ ++              ++    +  ++ D   H S+ +GIR A      +   + H +M+HL+  +        V+V DS++S  G  AP+ ++ ++ R++   LV+D++H     G NG G+ + L + E
Sbjct:   46 VVMQSNDYLSLSHNLQIQQAHRDAIYEHDDNVVMSAIFLQDDDSKPAFETQLAEYVGMGSCLLSQSGWAANIGLL--------------QTICPPETPVYIDFFAHMSLWEGIRAAG----AQAHPFMHNNMNHLRKQIQ--RNGSGVIVVDSVYSTIGTIAPLRDIYEMAREFDCALVVDESHSLGTHGPNGSGLVKALELTE 229          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: BIKB_HELPY (Putative 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase OS=Helicobacter pylori GN=HP_0598 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.339e-12
Identity = 62/204 (30.39%), Postives = 91/204 (44.61%), Query Frame = 1
Query:   85 FSGNDYLGLSSHPTIAKAAARAAQEH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRK-KVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEHLTVKE 690
            ++ NDYLGLS    + + A    Q      P+ S L+ GY   H  LE  LA+L   E  LL  +GF  N+A+      I +LL         +   +F DA  HAS I   +I    K  +V  + H D+  LK  L      K K +  + ++SMD   AP      ++      L++D+AH     G+N  G  E+  +KE
Sbjct:   28 YASNDYLGLSVKKDLLQNAFNKLQSFVSHSPKASMLVNGYHPLHAELEERLANLLGFESALLVGSGFLGNLAL------IDTLLV--------KNALLFMDAHYHASGIFSTKI----KPNQVIFFSHNDIKDLKQKLFNAPKNKIKFIAIEGVYSMDASVAPYDFYAIIQEIPNAFLIVDEAHSFGTIGENLLGFLEYYRIKE 213          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: SPTC1_PONAB (Serine palmitoyltransferase 1 OS=Pongo abelii GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.189e-11
Identity = 54/213 (25.35%), Postives = 96/213 (45.07%), Query Frame = 1
Query:   70 KRLLLFSGNDYLGLSSHPTIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLS-----------CCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEH 675
            K  + F+  ++LGL  +P +  AA  + +++G+G  G     G  + H  LE  LA   K E+ ++   GFA   + I A      +              +F D     +I  G++ +      ++ ++KH DM+ L+ LL               + ++ +V + L+   G   P+ ELVKL+ KY   + L+++    V G++G GV EH
Sbjct:   98 KECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDI--------------VFVDRAACFAIQKGLQASRS----DIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEH 292          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: SPTC1_MACFA (Serine palmitoyltransferase 1 OS=Macaca fascicularis GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.189e-11
Identity = 54/213 (25.35%), Postives = 96/213 (45.07%), Query Frame = 1
Query:   70 KRLLLFSGNDYLGLSSHPTIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLS-----------CCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEH 675
            K  + F+  ++LGL  +P +  AA  + +++G+G  G     G  + H  LE  LA   K E+ ++   GFA   + I A      +              +F D     +I  G++ +      ++ ++KH DM+ L+ LL               + ++ +V + L+   G   P+ ELVKL+ KY   + L+++    V G++G GV EH
Sbjct:   98 KECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDI--------------VFVDRAACFAIQKGLQASRS----DIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEH 292          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: SPTC1_HUMAN (Serine palmitoyltransferase 1 OS=Homo sapiens GN=SPTLC1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.189e-11
Identity = 54/213 (25.35%), Postives = 96/213 (45.07%), Query Frame = 1
Query:   70 KRLLLFSGNDYLGLSSHPTIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLS-----------CCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEH 675
            K  + F+  ++LGL  +P +  AA  + +++G+G  G     G  + H  LE  LA   K E+ ++   GFA   + I A      +              +F D     +I  G++ +      ++ ++KH DM+ L+ LL               + ++ +V + L+   G   P+ ELVKL+ KY   + L+++    V G++G GV EH
Sbjct:   98 KECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDI--------------VFVDRAACFAIQKGLQASRS----DIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEH 292          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: SPTC3_HUMAN (Serine palmitoyltransferase 3 OS=Homo sapiens GN=SPTLC3 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 1.285e-11
Identity = 54/228 (23.68%), Postives = 100/228 (43.86%), Query Frame = 1
Query:   31 LANDKTTTF---ARQFKRLLLFSGNDYLGLSS-HPTIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTM----------RKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAE 672
            +++D   TF    R  K ++     ++LGL++ +    +      + +G G   +    G  + H+ LE  +A     E  ++   GFA N   I A+     L              I SD LNH S++ G R++  T    + ++KH +   L+ LL    +          +K +++ + ++SM+G    + +++ L++KY   L +D+AH     G  G GV E
Sbjct:  144 VSDDYNWTFRFTGRVIKDVINMGSYNFLGLAAKYDESMRTIKDVLEVYGTGVASTRHEMGTLDKHKELEDLVAKFLNVEAAMVFGMGFATNSMNIPALVGKGCL--------------ILSDELNHTSLVLGARLSGAT----IRIFKHNNTQSLEKLLRDAVIYGQPRTRRAWKKILILVEGVYSMEGSIVHLPQIIALKKKYKAYLYIDEAHSIGAVGPTGRGVTE 353          

HSP 2 Score: 25.0238 bits (53), Expect = 1.285e-11
Identity = 9/23 (39.13%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  692 VDICVGTLSKAAGCQGGFMHAAK 760
            VD+ +GT +K+ G  GG++   K
Sbjct:  362 VDVLMGTFTKSFGASGGYIAGRK 384          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: SPTC1_MOUSE (Serine palmitoyltransferase 1 OS=Mus musculus GN=Sptlc1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 53/213 (24.88%), Postives = 98/213 (46.01%), Query Frame = 1
Query:   70 KRLLLFSGNDYLGLSSHPTIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLS-----------CCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEH 675
            K  + F+  ++LGL ++P +  AA  + +++G+G  G     G  + H  LE  LA   K E+ ++   GF+   + I A      +              IF D+    +I  G++ +      ++ ++KH D++ L+ LL               + ++ +V + L+   G   P+ ELVKL+ KY   + L+++    V G++G GV EH
Sbjct:   98 KECVNFASFNFLGLLANPRVKAAAFSSLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMKTEEAIIYSYGFSTVASAIPAYSKRGDI--------------IFVDSAACFAIQKGLQASRS----DIKLFKHNDVADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEH 292          
BLAST of EY693079 vs. ExPASy Swiss-Prot
Match: SPTC1_BOVIN (Serine palmitoyltransferase 1 OS=Bos taurus GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 54/216 (25.00%), Postives = 95/216 (43.98%), Query Frame = 1
Query:   70 KRLLLFSGNDYLGLSSHPTIAKAAARAAQEHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLS-----------CCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEHLTV 684
            K  + F+  ++LGL  +P +  AA  + +++G+G  G     G  + H  LE  LA   K E+ ++   GFA   + I A      ++  D       K A F+           I+   +    ++ V+ H DM  L+ LL               + ++ ++ + L+   G   P+ ELVKL+ KY   + L+++    V G++G GV EH  +
Sbjct:   98 KECINFASFNFLGLLDNPRLKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVD-------KAACFA-----------IQKGLQASRSDIKVFNHNDMDDLERLLKEQEIEDQKNPRKARVTRRFIIVEGLYMNTGTVCPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHFGI 295          
The following BLAST results are available for this feature:
BLAST of EY693079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
BIKB_HELPJ1.405e-1230.88Putative 8-amino-7-oxononanoate synthase/2-amino-3... [more]
CQSA_VIBHB5.339e-1225.98CAI-1 autoinducer synthase OS=Vibrio harveyi (stra... [more]
BIKB_HELPY5.339e-1230.39Putative 8-amino-7-oxononanoate synthase/2-amino-3... [more]
SPTC1_PONAB1.189e-1125.35Serine palmitoyltransferase 1 OS=Pongo abelii GN=S... [more]
SPTC1_MACFA1.189e-1125.35Serine palmitoyltransferase 1 OS=Macaca fascicular... [more]
SPTC1_HUMAN1.189e-1125.35Serine palmitoyltransferase 1 OS=Homo sapiens GN=S... [more]
SPTC3_HUMAN1.285e-1123.68Serine palmitoyltransferase 3 OS=Homo sapiens GN=S... [more]
SPTC1_MOUSE4.519e-1124.88Serine palmitoyltransferase 1 OS=Mus musculus GN=S... [more]
SPTC1_BOVIN4.519e-1125.00Serine palmitoyltransferase 1 OS=Bos taurus GN=SPT... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-007-E09-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693079 ID=EY693079; Name=EY693079; organism=Citrus sinensis; type=EST; length=922bp
CCACGCGTCCGGATTATTTGCGGAGATGGTCTAGCAAATGATAAGACTAC
AACTTTTGCTAGGCAGTTCAAGAGGCTGCTATTGTTCTCTGGAAATGATT
ATTTGGGCTTGAGTTCGCATCCCACTATTGCAAAGGCTGCTGCGAGGGCA
GCGCAAGAGCACGGAATGGGCCCAAGGGGTTCTGCTTTAATCTGCGGTTA
CACCAATTACCATAGGTTACTAGAGTCATGCTTGGCGGATTTAAAGAAGA
AGGAGGATTGTCTTCTCTGTCCCACAGGCTTTGCAGCCAATATGGCTGTG
ATTGTAGCAGTTGGAAACATTGCCTCTCTCCTAGCTGGAGATGAAAAATC
TTTTAAAGATGAAAAAATTGCCATATTTTCTGATGCACTAAACCATGCAT
CAATAATTGATGGTATTCGTATTGCTGAGCGGACTAAAATGGTTGAAGTT
TTTGTATATAAACACTGTGACATGTCCCACCTCAAGACACTGTTATCATG
TTGCACGATGAGGAAAAAAGTTGTTGTAACGGACAGCTTGTTCAGTATGG
ATGGAGACTTTGCACCAATGGTTGAACTTGTGAAGCTTCGCAGGAAGTAT
GGCTTTCTGCTTGTCCTAGATGATGCTCATGGGACCTTTGTTTGTGGAAA
AAACGGTGGGGGAGTGGCTGAACATTTAACTGTGAAAGAATGTAGATATA
TGTGTTGGCACTCTGAGTAAAGCGGCAGGGTGTCAGGGTGGCTTCATGCA
TGCAGCAAAAGTGGNAAGAAATCATACNATCTAGAGGCCGCTCTTTTATA
TTTTCACAGCCATACCGATCCCCATGCAGCTGCTGACATGCTGCTNGTAT
TGTGTCAATAAGAAACATGGCGTAAAAGGCATTTTGGAACATGTGCATAC
TCCATGGTCTACTGGAATCCCA
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