EY693001

Overview
NameEY693001
Unique NameEY693001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.030e-20
Identity = 53/153 (34.64%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  102 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKE--YAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLGLF 554
            RE I+  +GQ G Q+G   W+  C+EHGI P+G +  ++    G+D  + FF +    ++VPRAV +DLEP VI+  +   Y  L++PE +   K    A NN+ RG Y   +++ +  ++ I + AD    L+GF++ ++  GGT S  G +
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGIL--EEYAQNGEDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSPYASLYNPENIFISKHGGGAGNNWGRG-YCDAEKVQEEIIEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSY 152          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.030e-20
Identity = 56/150 (37.33%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  102 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMP-SDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLG 548
            RE ++I  GQAG QVG A W +   EHG+   G    +D         + T    +G   +VPR+V VDLE  V +  R+G   QLF P+   +    A NN+A+G+YT G E+ D  LD + +  +    LQGF + ++ GGGT + LG
Sbjct:    3 REIVNIQAGQAGNQVGEAFWRMLLAEHGLDDAGMYKGNDPQQIARAGVYFTQVDSSGPTKYVPRSVQVDLESGVCNRLRSGPLGQLFRPDTYFTSDSGAGNNWAKGYYTEGAELIDGILDIVRRQCEATEALQGFQMIHSLGGGTGAGLG 152          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.652e-20
Identity = 56/153 (36.60%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  102 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKE--YAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLGLF 554
            RE I++  GQ G QVG+  W+  CLEHGI PDG +    T   G D  + FF ++    ++PRA+ +DLEP V++   + TY  L++PE +    +   A NN+A G Y   ++I +  +D I + A+    L+GF + ++  GGT S LG +
Sbjct:    3 REIITLQAGQCGNQVGSQFWQQLCLEHGICPDGTLEDFAT--EGLDRKDVFFYQSDDTRYIPRAILLDLEPRVVNNILSDTYGSLYNPENIFVATDGGGAGNNWAHG-YAHAEKIFEDIVDMIDREAEGSDSLEGFSLLHSIAGGTGSGLGSY 152          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.464e-20
Identity = 55/152 (36.18%), Postives = 90/152 (59.21%), Query Frame = 3
Query:  102 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQ-LISGKEYAANNFARGHYTIGK--EIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLG 548
            RE I++++GQ G Q+G+  ++  C EHGI PDG + +++ +   DD  + FF +     +VPR++ +DLEP V+D  RT  +R  ++PE  +I     A N++A G+YT  K  EI ++    I +  ++C  L+GF   ++  GGT S LG
Sbjct:    3 REIITLNVGQCGNQLGSEFFKKICSEHGILPDGSLSTNEFI---DDRKDVFFYQADDQRYVPRSINIDLEPRVLDSIRTSEWRNFYNPENFIIPTNNGAGNSWANGYYTTEKMSEIEEI----IDREVEHCDSLEGFFFCHSICGGTGSGLG 147          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.523e-20
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 3
Query:  105 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKE--YAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLGLF 554
            E I++ +GQ G Q+G   W+  CLEHGI P G +  +     G D  + FF +    +++PRAV +DLEP VI+      Y +L++PE +   K    A NN+A G Y+ G+++ +   D I + AD    L+GF++ ++  GGT S +G F
Sbjct:    4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPSGVL--EDFANDGLDRKDVFFYQADDDHYIPRAVLLDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASG-YSQGEKLQEEVFDIIDREADGSDSLEGFILCHSIAGGTGSGMGSF 152          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.316e-19
Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  102 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKE--YAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLGLF 554
            RE I++ +GQ G Q+G+  W+  C EHGI   G +  ++    G D  + FF ++   ++VPRA+ +DLEP VID  +T  Y  L++ E +   ++   A NN+A G Y  G+   D   D I + AD    L+GFL+ ++  GGT S +G +
Sbjct:    3 REIITLQVGQCGNQIGSEFWKQLCKEHGINAAGYL--EEFAKPGIDRKDVFFYQSDDDHYVPRALLLDLEPRVIDSIKTSEYSGLYNQENIFVAEKGTGAGNNWANG-YKQGESFYDDIFDMIDREADGSESLEGFLLTHSISGGTGSGMGSY 152          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBG2_MOUSE (Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.316e-19
Identity = 55/153 (35.95%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  102 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKE--YAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLGLF 554
            RE I++ +GQ G Q+G   W+  C EHGI P+G +    T   G D  + FF +    +++PRAV +DLEP VI      +Y +L++PE +   +    A NN+ RG ++ G++I +   D I + AD    L+GF++ ++  GGT S LG +
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWGRG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSY 152          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBG1_RAT (Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 55/153 (35.95%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  102 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKE--YAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLGLF 554
            RE I++ +GQ G Q+G   W+  C EHGI P+G +    T   G D  + FF +    +++PRAV +DLEP VI      +Y +L++PE +   +    A NN+A G ++ G++I +   D I + AD    L+GF++ ++  GGT S LG +
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSY 152          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 55/153 (35.95%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  102 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKE--YAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLGLF 554
            RE I++ +GQ G Q+G   W+  C EHGI P+G +    T   G D  + FF +    +++PRAV +DLEP VI      +Y +L++PE +   +    A NN+A G ++ G++I +   D I + AD    L+GF++ ++  GGT S LG +
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSY 152          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBG2_HUMAN (Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.829e-19
Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  102 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKE--YAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLGLF 554
            RE I++ +GQ G Q+G   W+  C EHGI P+G +    T   G D  + FF +    +++PRAV +DLEP VI       Y +L++PE +   +    A NN+A G ++ G++I +   D I + AD    L+GF++ ++  GGT S LG +
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSY 152          
The following BLAST results are available for this feature:
BLAST of EY693001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
TBG1_EUPCR2.030e-2034.64Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBB2_SUIBO2.030e-2037.33Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]
TBG_SCHJP2.652e-2036.60Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]
TBG_ENTHI3.464e-2036.18Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBG1_DROME4.523e-2036.18Tubulin gamma-1 chain OS=Drosophila melanogaster G... [more]
TBG_DICDI1.316e-1935.95Tubulin gamma chain OS=Dictyostelium discoideum GN... [more]
TBG2_MOUSE1.316e-1935.95Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=... [more]
TBG1_RAT2.245e-1935.95Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg... [more]
TBG1_MOUSE2.245e-1935.95Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=... [more]
TBG2_HUMAN3.829e-1935.95Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-G02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693001 ID=EY693001; Name=EY693001; organism=Citrus sinensis; type=EST; length=827bp
CCACGCGTCCGAATTTCACTAGAAGGCGTCTTAATAAACGCCTTCGTTTA
GATTCAATTACTTTACGTCGCCGATTTTTCTTCTCTTAATCTGCGAAAAT
GAGAGAGTGCATTTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAA
ATGCCTGCTGGGAACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGC
CAAATGCCCAGTGATAAGACAGTCGGAGGCGGCGACGATGCTTTCAACAC
CTTTTTCAGTGAAACTGGCGCAGGGAACCACGTGCCTCGTGCTGTCTTTG
TTGATCTTGAGCCCACTGTCATTGATGAAGAGAGGACCGGAACTTACCGC
CAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAATACGCTGCCAA
CAACTTCGCCCGTGGCCACTATACCATTGGTAAGGAGATTGCTGATCTCT
GCCTTGACCGCATCACGAAGCTGGCTGATAACTGCACTGTTCTCCAGGGA
TTCCTTGTTTTCAATGCTGCTGGTGGAGGAACTGCCTCTGATCTGGGTCT
CTTCTTCTGGACAGCTGTCTGTTGCTATGGAAAGAAAGCAAGTTGGCTAC
CTGACACCCAGCTCTCAGACTCCACTTCTGTGGTGAGCCTACAGAGTGTC
CTCTCACCCACTCGCTGTGAAGCATCTGATGAGGTCGTCTCCCCGACATG
ACGCCATGATAACATCGCAGGCCTCCTTGGATGGACGTCCTACTTACTAG
CCCAATAACTTGGTCCCAGTCATTCCTAATGACTGCCTACTGAAGATGAG
GCGCGTTAAAGGGTTGGACTGATTCCA
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