EY693001

Overview
NameEY693001
Unique NameEY693001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.779e-16
Identity = 44/76 (57.89%), Postives = 52/76 (68.42%), Query Frame = 3
Query:  375 ISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLG-LFFWTAVCCYGKKASWL 599
            + GKE AANN+ARGHYT+GKE+ ++C DRI KLAD C  LQGFLVF++ GGGT S  G L        YG K S L
Sbjct:    1 LRGKEDAANNYARGHYTVGKELIEVCADRIRKLADQCEGLQGFLVFHSVGGGTGSGFGSLLLQRLALEYGGKKSKL 76          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.355e-15
Identity = 52/166 (31.33%), Postives = 79/166 (47.59%), Query Frame = 3
Query:   99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSET-----GAGNHVP---------RAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLGLF 554
            M + + + +GQ G Q+G   W+L   EH         +    G  D+A ++FF        G G  +          RAV +D+E  V++E   G  R +F  +QLI+    + NN+A GH   G    D  L++  K A++C  LQ F + ++ GGGT S LG F
Sbjct:    1 MTQSVVVQVGQCGNQIGCCFWDLALREHA--------AVNQKGIYDEAISSFFRNVDTRVVGDGGSISKGKICSLKARAVLIDMEEGVVNEILQGPLRDVFDTKQLITDISGSGNNWAVGHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSMGGGTGSGLGTF 158          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.722e-15
Identity = 52/166 (31.33%), Postives = 79/166 (47.59%), Query Frame = 3
Query:   99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSET-----GAGNHVP---------RAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLGLF 554
            M + + + +GQ G Q+G   W+L   EH         +    G  DDA ++FF        G G  +          RAV +D+E  V++E   G  R +F  +QLI+    + NN+A GH   G    +  L+++ K A+ C  LQ F + ++ GGGT S LG F
Sbjct:    1 MTQSVVVQVGQCGNQIGCCFWDLALREHA--------AVNQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTF 158          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.761e-15
Identity = 56/160 (35.00%), Postives = 75/160 (46.88%), Query Frame = 3
Query:  105 ECISIHIGQAGIQVGNACWELYCLEHGIQPDG--QMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQ--LISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLGLFFWTAVC 572
            E I++  GQ G  VG   W     EH I  DG  Q+P   T    DD    FF E       PRA+ +D EP+VI +    T+R  F P    + S    A N++A G Y IG    D  L++I K  D+    +GF + ++  GGT S LG     A+C
Sbjct:    4 EIITLQAGQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTER--DDDTKPFFRENSRNKFTPRAIMMDSEPSVIADVE-NTFRGFFDPRNTWVASDGASAGNSWANG-YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALC 159          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.844e-14
Identity = 48/150 (32.00%), Postives = 73/150 (48.67%), Query Frame = 3
Query:  105 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMP-SDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQL-ISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLG 548
            E I+I +GQ G  VG   W     EHGI  DG    +D      +D  N FF +     +VPRA+ +DLEP  + + ++ ++  LF+P    +S +   A N     Y  G +  D  +D I +  D+    +GF + ++  GGT S LG
Sbjct:    4 EIITIQVGQCGNHVGKYFWNQLLKEHGIDKDGYSKYNDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQS-SFNDLFNPRNTWVSSEGLGAGNSWSTGYDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLG 152          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.409e-13
Identity = 49/149 (32.89%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  111 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVID-EERTGTYRQLFHPEQLISGKE--YAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLG 548
            +++H+GQ G Q+  A W+    EHGI   GQ   +  +   +D  +  F +    ++VPRAV VDLEP VI+   ++  +  LF+ + +        A NN+A G Y  G+E+ +  +D I + A+N   L G L  ++  GGT S  G
Sbjct:    8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTG 152          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.409e-13
Identity = 55/151 (36.42%), Postives = 71/151 (47.02%), Query Frame = 3
Query:  105 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM--PSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQL-ISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLG 548
            E ISI +GQ G QVG   W     EHGI  DGQ   P D  V   DD  N FF +       PRA+  DLEP+ I + +   +   F+   + IS +E  A N     Y  G E  D  ++ I K  D     +GF + ++  GGT S LG
Sbjct:    4 EIISIQVGQCGNQVGKQFWGQLAREHGIGVDGQSLHPEDANVVREDDT-NVFFRQNDHNRFTPRALLYDLEPSAIGDVQ-NCFPGFFNERNVWISKEELGAGNTWSIGYDYGLEKQDEFMNMIDKEIDATGNFEGFQLIHSVAGGTGSGLG 152          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBB_HALDI (Tubulin beta chain (Fragment) OS=Haliotis discus PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.035e-12
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 3
Query:  333 RTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLG 548
            R+G + Q+F P+  + G+  A NN+A+GHYT G E+ D  LD + K A++C  LQGF + ++ GGGT S +G
Sbjct:    3 RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMG 74          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 45/158 (28.48%), Postives = 75/158 (47.47%), Query Frame = 3
Query:  111 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNT-----FFSETGAGNHVPRAVFVDLEPTVIDEE-----RTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLGLF 554
            +++ +GQ G QVG   +++ C +   +P      +      +D + T     FF E   G+ V RAV VD+EP V+ +      R+G ++  +      S K+   NN+A G+   G +  D+ +D + K  + C  L GF    +  GGT S +G F
Sbjct:    4 VTVQLGQCGNQVGYEFFDILCSDLHSKPGHSTKRE------NDYYQTVCKEQFFHEEECGDLVTRAVLVDMEPKVVSKTLSMAGRSGKWK--YDISSQFSQKQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTF 153          
The following BLAST results are available for this feature:
BLAST of EY693001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
TBA_DICPU1.779e-1657.89Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBE_HUMAN3.355e-1531.33Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBE_MOUSE5.722e-1531.33Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG_YEAST9.761e-1535.00Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBG_CANGA4.844e-1432.00Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBG_CAEEL1.409e-1332.89Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBG_ASHGO1.409e-1336.42Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBB_HALDI2.035e-1244.44Tubulin beta chain (Fragment) OS=Haliotis discus P... [more]
TBD_XENTR3.838e-1128.48Tubulin delta chain OS=Xenopus tropicalis GN=tubd1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-G02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693001 ID=EY693001; Name=EY693001; organism=Citrus sinensis; type=EST; length=827bp
CCACGCGTCCGAATTTCACTAGAAGGCGTCTTAATAAACGCCTTCGTTTA
GATTCAATTACTTTACGTCGCCGATTTTTCTTCTCTTAATCTGCGAAAAT
GAGAGAGTGCATTTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAA
ATGCCTGCTGGGAACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGC
CAAATGCCCAGTGATAAGACAGTCGGAGGCGGCGACGATGCTTTCAACAC
CTTTTTCAGTGAAACTGGCGCAGGGAACCACGTGCCTCGTGCTGTCTTTG
TTGATCTTGAGCCCACTGTCATTGATGAAGAGAGGACCGGAACTTACCGC
CAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAATACGCTGCCAA
CAACTTCGCCCGTGGCCACTATACCATTGGTAAGGAGATTGCTGATCTCT
GCCTTGACCGCATCACGAAGCTGGCTGATAACTGCACTGTTCTCCAGGGA
TTCCTTGTTTTCAATGCTGCTGGTGGAGGAACTGCCTCTGATCTGGGTCT
CTTCTTCTGGACAGCTGTCTGTTGCTATGGAAAGAAAGCAAGTTGGCTAC
CTGACACCCAGCTCTCAGACTCCACTTCTGTGGTGAGCCTACAGAGTGTC
CTCTCACCCACTCGCTGTGAAGCATCTGATGAGGTCGTCTCCCCGACATG
ACGCCATGATAACATCGCAGGCCTCCTTGGATGGACGTCCTACTTACTAG
CCCAATAACTTGGTCCCAGTCATTCCTAATGACTGCCTACTGAAGATGAG
GCGCGTTAAAGGGTTGGACTGATTCCA
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