EY693001

Overview
NameEY693001
Unique NameEY693001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.811e-69
Identity = 126/165 (76.36%), Postives = 138/165 (83.64%), Query Frame = 3
Query:   99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDL-GLFFWTAVCCYGKKA 590
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAG HVPRAVFVDLEPTVIDE R G YRQLFHPEQLI+GKE AANN+ARGHYTIGKEI D  LDRI KL+D CT LQGFLVF++ GGGT S    L        YGKK+
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKS 165          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.811e-69
Identity = 126/165 (76.36%), Postives = 138/165 (83.64%), Query Frame = 3
Query:   99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDL-GLFFWTAVCCYGKKA 590
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAG HVPRAVFVDLEPTVIDE R G YRQLFHPEQLI+GKE AANN+ARGHYTIGKEI D  LDRI KL+D CT LQGFLVF++ GGGT S    L        YGKK+
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKS 165          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.811e-69
Identity = 126/165 (76.36%), Postives = 138/165 (83.64%), Query Frame = 3
Query:   99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDL-GLFFWTAVCCYGKKA 590
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAG HVPRAVFVDLEPTVIDE R G YRQLFHPEQLI+GKE AANN+ARGHYTIGKEI D  LDRI KL+D CT LQGFLVF++ GGGT S    L        YGKK+
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKS 165          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.811e-69
Identity = 126/165 (76.36%), Postives = 138/165 (83.64%), Query Frame = 3
Query:   99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDL-GLFFWTAVCCYGKKA 590
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAG HVPRAVFVDLEPTVIDE R G YRQLFHPEQLI+GKE AANN+ARGHYTIGKEI D  LDRI KL+D CT LQGFLVF++ GGGT S    L        YGKK+
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKS 165          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.811e-69
Identity = 126/165 (76.36%), Postives = 138/165 (83.64%), Query Frame = 3
Query:   99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDL-GLFFWTAVCCYGKKA 590
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAG HVPRAVFVDLEPTVIDE R G YRQLFHPEQLI+GKE AANN+ARGHYTIGKEI D  LDRI KL+D CT LQGFLVF++ GGGT S    L        YGKK+
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKS 165          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBA_HAECO (Tubulin alpha chain OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 4.035e-69
Identity = 127/165 (76.97%), Postives = 140/165 (84.85%), Query Frame = 3
Query:   99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDL-GLFFWTAVCCYGKKA 590
            MRE ISIHIGQAG+Q+GNACWELYCLEHGIQPDGQMPSDK++GG DD+F+TFFSETG+G HVPRAV +DLEPTVIDE RTGTYR LFHPEQLI+GKE AANN+ARGHYTIGKEI DL LDRI +LADNCT LQGFLVF++ GGGT S    L        YGKKA
Sbjct:    1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGCDDSFSTFFSETGSGRHVPRAVMIDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLDRIRRLADNCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKA 165          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.882e-69
Identity = 124/165 (75.15%), Postives = 138/165 (83.64%), Query Frame = 3
Query:   99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDL-GLFFWTAVCCYGKKA 590
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQP GQMPSDK VGG DD+FNTFFSETG+G HVPRAVFVDLEPTV+DE RTG YRQLFHPEQLI+GKE AANN+ARGHYTIGKE  DL LDR+ KL+D CT LQGFL+F++ GGGT S    L        YGKK+
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPSGQMPSDKAVGGKDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEIRTGLYRQLFHPEQLITGKEDAANNYARGHYTIGKEHIDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKS 165          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.882e-69
Identity = 129/165 (78.18%), Postives = 138/165 (83.64%), Query Frame = 3
Query:   99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLG-LFFWTAVCCYGKKA 590
            MRE ISIHIGQAGIQVGN+CWELYCLEHGIQPDG MPSD ++G   DAFNTFFSETGAG HVPRA+FVDLEPTVIDE +TG YRQLFHPEQLIS KE AANNFARGHYT+G+EI D CLDRI KLADNCT LQGFLVFNA GGGT S LG L        YG+K+
Sbjct:    1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSLGVARDAFNTFFSETGAGKHVPRALFVDLEPTVIDEVKTGPYRQLFHPEQLISYKEDAANNFARGHYTVGREIVDPCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGRKS 165          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.416e-68
Identity = 123/165 (74.55%), Postives = 135/165 (81.82%), Query Frame = 3
Query:   99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDL-GLFFWTAVCCYGKKA 590
            MRECIS+H+GQAG+Q+GN CWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAG HVPRA+FVDLEPTVIDE R G YRQLFHPEQLI+GKE  ANN+ARGHYTIGKEI D  LDRI KLAD CT LQGFL F++ GGGT S    L        YGKK+
Sbjct:    1 MRECISVHVGQAGVQMGNTCWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAIFVDLEPTVIDEVRAGIYRQLFHPEQLITGKEDGANNYARGHYTIGKEIIDQVLDRIRKLADQCTGLQGFLCFHSFGGGTGSGFTSLLMERLSGDYGKKS 165          
BLAST of EY693001 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 9.938e-68
Identity = 122/165 (73.94%), Postives = 138/165 (83.64%), Query Frame = 3
Query:   99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGNHVPRAVFVDLEPTVIDEERTGTYRQLFHPEQLISGKEYAANNFARGHYTIGKEIADLCLDRITKLADNCTVLQGFLVFNAAGGGTASDLGLFFWTAVCC-YGKKA 590
            MRECISIH+GQAG+Q+GN+CWELYCLEHGIQPDGQMPSDKTVG  +D+FNTFF+ETG+G HVPRAVFVDLEP+VIDE R+G YRQLFHPEQLISGKE AANN+ARGHYTIGKE  D+ LDRI KLAD CT LQGFL+F + GGGT S         +   YGKK+
Sbjct:    1 MRECISIHVGQAGVQMGNSCWELYCLEHGIQPDGQMPSDKTVGVCNDSFNTFFTETGSGKHVPRAVFVDLEPSVIDEVRSGIYRQLFHPEQLISGKEDAANNYARGHYTIGKEYVDIVLDRIRKLADQCTGLQGFLIFRSFGGGTGSGFASLLMERLSVEYGKKS 165          
The following BLAST results are available for this feature:
BLAST of EY693001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
TBA4A_RAT1.811e-6976.36Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub... [more]
TBA4A_MOUSE1.811e-6976.36Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]
TBA4A_MACFA1.811e-6976.36Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN1.811e-6976.36Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
TBA4A_BOVIN1.811e-6976.36Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA_HAECO4.035e-6976.97Tubulin alpha chain OS=Haemonchus contortus PE=2 S... [more]
TBA_ENTDO6.882e-6975.15Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ... [more]
TBA2_ELEIN6.882e-6978.18Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ... [more]
TBA5_CHICK3.416e-6874.55Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBA2_HOMAM9.938e-6873.94Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-G02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693001 ID=EY693001; Name=EY693001; organism=Citrus sinensis; type=EST; length=827bp
CCACGCGTCCGAATTTCACTAGAAGGCGTCTTAATAAACGCCTTCGTTTA
GATTCAATTACTTTACGTCGCCGATTTTTCTTCTCTTAATCTGCGAAAAT
GAGAGAGTGCATTTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAA
ATGCCTGCTGGGAACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGC
CAAATGCCCAGTGATAAGACAGTCGGAGGCGGCGACGATGCTTTCAACAC
CTTTTTCAGTGAAACTGGCGCAGGGAACCACGTGCCTCGTGCTGTCTTTG
TTGATCTTGAGCCCACTGTCATTGATGAAGAGAGGACCGGAACTTACCGC
CAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAATACGCTGCCAA
CAACTTCGCCCGTGGCCACTATACCATTGGTAAGGAGATTGCTGATCTCT
GCCTTGACCGCATCACGAAGCTGGCTGATAACTGCACTGTTCTCCAGGGA
TTCCTTGTTTTCAATGCTGCTGGTGGAGGAACTGCCTCTGATCTGGGTCT
CTTCTTCTGGACAGCTGTCTGTTGCTATGGAAAGAAAGCAAGTTGGCTAC
CTGACACCCAGCTCTCAGACTCCACTTCTGTGGTGAGCCTACAGAGTGTC
CTCTCACCCACTCGCTGTGAAGCATCTGATGAGGTCGTCTCCCCGACATG
ACGCCATGATAACATCGCAGGCCTCCTTGGATGGACGTCCTACTTACTAG
CCCAATAACTTGGTCCCAGTCATTCCTAATGACTGCCTACTGAAGATGAG
GCGCGTTAAAGGGTTGGACTGATTCCA
back to top