EY692672

Overview
NameEY692672
Unique NameEY692672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692672 vs. ExPASy Swiss-Prot
Match: GAT12_ARATH (GATA transcription factor 12 OS=Arabidopsis thaliana GN=At4g36240 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.109e-24
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  469 QAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMR 672
            Q  R C HC + KTPQWR GP+G KTLCNACGVR+KSGRL PEYRPA SPTF   +HSNSH+KV+E+R
Sbjct:  161 QLRRCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNEIHSNSHRKVLELR 228          
BLAST of EY692672 vs. ExPASy Swiss-Prot
Match: GATA7_ARATH (Putative GATA transcription factor 7 OS=Arabidopsis thaliana GN=At2g28340 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.060e-24
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 1
Query:  481 KCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNKN 681
            KC HCE T TPQWR GP G KTLCNACG+R++SGRL  EYRPAASPTF+P++HSN HKK++ MR K+
Sbjct:  216 KCTHCETTTTPQWREGPNGRKTLCNACGIRFRSGRLVLEYRPAASPTFIPTVHSNLHKKIIYMRMKD 282          
BLAST of EY692672 vs. ExPASy Swiss-Prot
Match: GATA3_ARATH (GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.632e-23
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 1
Query:  478 RKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMR 672
            R+C HC    TPQWR GP+GPKTLCNACGVR+KSGRL PEYRPA SPTF   +HSN H+KV+E+R
Sbjct:  180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELR 244          
BLAST of EY692672 vs. ExPASy Swiss-Prot
Match: GATA8_ARATH (GATA transcription factor 8 OS=Arabidopsis thaliana GN=At3g45170 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.201e-21
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1
Query:  478 RKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNKNCQKP 693
            + C HC   KTP WR GP G  TLCNACG+RY++GRL PEYRPA+SP F P++HSN H+KV+E+R +    P
Sbjct:  115 KSCSHCGTRKTPLWREGPRGAGTLCNACGMRYRTGRLLPEYRPASSPDFKPNVHSNFHRKVMEIRRERKSSP 186          
The following BLAST results are available for this feature:
BLAST of EY692672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GAT12_ARATH3.109e-2470.59GATA transcription factor 12 OS=Arabidopsis thalia... [more]
GATA7_ARATH4.060e-2470.15Putative GATA transcription factor 7 OS=Arabidopsi... [more]
GATA3_ARATH2.632e-2370.77GATA transcription factor 3 OS=Arabidopsis thalian... [more]
GATA8_ARATH4.201e-2158.33GATA transcription factor 8 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-003-B12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692672 ID=EY692672; Name=EY692672; organism=Citrus sinensis; type=EST; length=845bp
CCACGCGTCCGTGATGAGGATTCCTTCTCTGGAGGAAGCCTTACTATGAG
CAAACAAGAGTCATCCACGATCACCAAGGACGATTCATCTCACAACCAGT
TTCAGACCTCCAGCCCGGTCTCTGTTTTAGAGAGCAGCAGCTCCTGCTCG
GGGGAGAAAACCGTGTTGGGAAGCCCTGAGACTACGGCCCCTGGGAGGCG
CGGGCGTGCTCGTAGCAAGCGCCCTCGCCCTGCAACATTTAATCCCCGTC
CTCCGGTTCAACTTGTGTCGCCAACTTCCTCAGTCACTGAGACACAACCA
CAGCATCGCTTAATTGCCCCCAAGGCCTCATCTGATTCTGAGAATTTTGC
AGAGTCTCGCCTTGTGATTAAAATACCAAAGCAATTCAACCCGGAGCACA
AGAAGAAAAAGAAAATCAAATTGTCAGTTCCAAAAGTTTCCGATGAGACT
AGTGAAGTTGGGCCAACACAAGCGGTTAGGAAATGCATGCATTGCGAGAT
AACGAAGACGCCTCAATGGAGAGCAGGGCCAATGGGGCCAAAAACCCTTT
GCAATGCATGCGGTGTTCGCTATAAGTCTGGCAGGCTCTTCCCCGAATAC
AGGCCTGCTGCTAGCCCGACATTTGTCCCATCCTTGCACTCCAATTCCCA
CAAAAAGGTTGTTGAAATGAGAAACAAGAATTGCCAGAAGCCAATTGTGG
GCTGCACTGNAACGATNATGACAGATGCACCAGAGTTGATTCCAAAACAT
ACCACCTTGCGCTGGAGTACGTTTGAAGGATCAAGACNGCTCANAGACAG
CATTCCCTGACGGGATATCTCTTTCCGGNNCTTGTATTGCCTATG
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