FC922780

Overview
NameFC922780
Unique NameFC922780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of FC922780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
UBIQ_CRIGR5.702e-1169.23Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_COPCO5.702e-1169.23Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_CHICK5.702e-1169.23Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA5.702e-1169.23Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO5.702e-1169.23Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA5.702e-1169.23Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR5.702e-1169.23Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_CAEEL5.702e-1169.23Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_BOVIN5.702e-1169.23Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_AGLNE5.702e-1169.23Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BD07RM1 SLH Citrus sinensis cDNA clone KN0AAM1BD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922780 ID=FC922780; Name=FC922780; organism=Citrus sinensis; type=EST; length=570bp
TTTTTCTTCCATGAAAGGCCTCCTAATCTCTCTGTCAAGATCGAGGACAA
GGAAGAGATCCTACGAGACCAGCAGAGGTTCATCTTTGCTGGCAAACGAC
TCGAGGATGGTCGCACACTTGTAGACTACAACATCCACGGGTCAACCCTT
CATTCGGTCCGCCGTTTCAGGGGTGGCATGCAGATATTTGTGAAAACCCT
GACCGGCAAAACATAAATTTGAAGGTCGAAAGCTCTGACACAATCGACAA
TGTCAAGGCTAAGATCCAGGACAAGAAGGGAACTCCACCGGACCAGCAGA
GGCAGATCTTTTGGTTTGTGTTTGGTTGGGGTAGTTTGTGGATGCCTCTC
CTGAGGTTTGACCTTTGAGAATGTATCTGGACGTGTATAAGCGTAGAAAA
TGTATCTGGACGTGTATAAGCGTAGAAAATGTATCTGGACGTGTATAAGC
GTAGAAAATGTATCTGGACGTGTATAAGCATTCGGATATGTGTTCGTTTG
CCAGTGAAATAATAATACCCTTCATTATCTGACTTGCAGTTTTTTAAAAA
AAAAAAAAAAAAAAAAAAAA
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