FC922780

Overview
NameFC922780
Unique NameFC922780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LE+GRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of FC922780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
UBIQ_ACECL5.702e-1169.23Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_ACACA5.702e-1169.23Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_YEAST9.726e-1169.23Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_TRYBB9.726e-1167.31Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_SCHPO9.726e-1169.23Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_PHYIN9.726e-1169.23Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_NEUCR9.726e-1169.23Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_KLULA9.726e-1169.23Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE9.726e-1169.23Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL9.726e-1169.23Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BD07RM1 SLH Citrus sinensis cDNA clone KN0AAM1BD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922780 ID=FC922780; Name=FC922780; organism=Citrus sinensis; type=EST; length=570bp
TTTTTCTTCCATGAAAGGCCTCCTAATCTCTCTGTCAAGATCGAGGACAA
GGAAGAGATCCTACGAGACCAGCAGAGGTTCATCTTTGCTGGCAAACGAC
TCGAGGATGGTCGCACACTTGTAGACTACAACATCCACGGGTCAACCCTT
CATTCGGTCCGCCGTTTCAGGGGTGGCATGCAGATATTTGTGAAAACCCT
GACCGGCAAAACATAAATTTGAAGGTCGAAAGCTCTGACACAATCGACAA
TGTCAAGGCTAAGATCCAGGACAAGAAGGGAACTCCACCGGACCAGCAGA
GGCAGATCTTTTGGTTTGTGTTTGGTTGGGGTAGTTTGTGGATGCCTCTC
CTGAGGTTTGACCTTTGAGAATGTATCTGGACGTGTATAAGCGTAGAAAA
TGTATCTGGACGTGTATAAGCGTAGAAAATGTATCTGGACGTGTATAAGC
GTAGAAAATGTATCTGGACGTGTATAAGCATTCGGATATGTGTTCGTTTG
CCAGTGAAATAATAATACCCTTCATTATCTGACTTGCAGTTTTTTAAAAA
AAAAAAAAAAAAAAAAAAAA
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