EY692549

Overview
NameEY692549
Unique NameEY692549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692549 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.370e-27
Identity = 54/138 (39.13%), Postives = 81/138 (58.70%), Query Frame = 2
Query:  170 SSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSD---GPNHNEFDFEFLGNTTGEPYLVQTNVYVNGV--GNREQRLDLWFDPTKEFHTYSLLWNSAKLYF 568
            S    ++ +   +  +++Q +G   KL LD  SGAG  SK+KY +G  S ++KL  G ++G V AFY+S+      +H+E D E LG +  + + +QTNVY NG     RE++   WFDPT+ FH Y+L+WNS    F
Sbjct:   39 SKIAIENGFSRRFGAHNIQVNGSLAKLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVF 176          

HSP 2 Score: 38.1206 bits (87), Expect = 1.370e-27
Identity = 18/46 (39.13%), Postives = 26/46 (56.52%), Query Frame = 1
Query:  562 VFLVDETPIRVHTNLEHKGIPLPKDQAMGVYSSIWNADDWATQGGK 699
            VFLVD  P+R   N        P  + M +Y ++W+  +WAT+GGK
Sbjct:  175 VFLVDNIPVRQFPNRGAFTSAYPS-KPMSLYVTVWDGSEWATKGGK 219          
BLAST of EY692549 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.334e-22
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 2
Query:  242 LKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNSAKLYFW 571
            L+L LD  SG+GF S+  Y  G  +++IK     S G +T+FY+ S    H+E  F+ LG   G PYL+ TN+Y+ G G ++QR  LWFDPTK++H+YS LWN  +L F+
Sbjct:   45 LQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSRHDELCFQILGKN-GPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFY 153          
The following BLAST results are available for this feature:
BLAST of EY692549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH33_ARATH1.370e-2739.13Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH4.334e-2245.45Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-H01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692549 ID=EY692549; Name=EY692549; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGGCATTTCAAAGTAGAAGCTTCAACTTCCCTCCACTTCAC
TGGGCCTGCTCTGCTCATTCGCTTACTTCCTCTCCCCGTTCTTCTGTCTT
CATTCTTCAATGGTTAAAATGTCTTTGATTTTCAGTCTGTTTGTGGGTCT
TTTAATGGTAGGTTTGGTCAGCTCAGCTAAGTTTGATGACCTTTATCAAA
CAAGCTGGGCATTTAATCATGTTCAGTATGATGGGGACACTCTCAAGCTT
AACCTCGATAATTATTCCGGAGCTGGGTTTGCGTCAAAGAGCAAGTATTT
GTTTGGGAAAGTCTCCATCCAAATTAAACTTGTAGGGGGTGACTCTGCTG
GAACTGTCACTGCCTTCTATATGTCATCAGACGGTCCAAATCACAACGAG
TTCGATTTTGAGTTCCTGGGGAACACTACAGGAGAGCCATACTTAGTCCA
AACCAATGTTTATGTGAATGGTGTGGGCAACAGAGAGCAGAGACTTGACC
TCTGGTTCGACCCAACAAAGGAATTTCATACCTATTCCCTCCTTTGGAAC
AGCGCCAAGTTGTATTTTTGGTGGATGAGACCCCAATTAGAGTGCACACT
AACTTGGAGCACAAAGGAATTCCCCTTCCCAAGGACCAAGCCATGGGTGT
GTACAGTTCAATATGGAATGCTGATGACTGGGCCACACAGGGGGGGAAAG
GGTCAAGACNGACTGNAGCCATGCACCTTTTGTTGCATCATACAAAGGCT
TTGAAATTGATGCATGTGAATGCCCANCGTCNGTTGCAGGTGCCGATAAT
GCCAAAAATGCAGCAGCAGTGCTGAGAAAAAGGTCCTGTGGATGAGCCAC
ATTGTCTGAGCTCATGTGCACCAAGCCACCAGCTCATGTGGTAGAGCCAT
CACTCATCATGACTATGACT
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