EY692526

Overview
NameEY692526
Unique NameEY692526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692526 vs. ExPASy Swiss-Prot
Match: PSA3_CAEEL (Proteasome subunit alpha type-3 OS=Caenorhabditis elegans GN=pas-7 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 5.390e-17
Identity = 69/228 (30.26%), Postives = 108/228 (47.37%), Query Frame = 2
Query:  146 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRXS*CDPAGHFFGHXATSAG--FEGAEAXXFLXKEMKNDPAFTFSETVQTAISTLHQSCKRILSX*N*GWRGEQGDPESEFCPS 823
            G GYD   + FSP+GR+FQVEYA KAV  AG T I +RGK+ V VV  K +  KL    +   +F +   +G+   G   D   L   A  EA ++   Y   MP+  +A  +A+   ++T     RP G  A  +S +++ G R    +P+G  + + A + G   + A+A     K  + D      E  +  +    ++  + +     GW GEQ + + E  PS
Sbjct:    5 GTGYDLAASTFSPDGRIFQVEYAQKAVDNAG-TMIAIRGKNGVVVVADKLISSKLYTDNANPRMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTL-GISRPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEKLKIEELDVNQLVKEAARIIMVVRDENKDKNVQI-EMGWVGEQTNGKYEEVPS 229          
BLAST of EY692526 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.201e-16
Identity = 54/197 (27.41%), Postives = 95/197 (48.22%), Query Frame = 2
Query:  155 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRXS*CDPAGHFFGHXATSAGFEGAEAXXFLXKEMKNDPAFTFSETVQTAISTLHQS 745
            YD  +T++SP+GRL QVEYA +A+K    T +G++ +    +V  K+  + L  H     ++ I  + G+   G+ +D R L +  + E + +R+ Y   +P+  LA+ +  K Q  TQ+   RP GV  ++   D++ G      DP+        TS G     A  +L + + N    T  + +  A+  L  +
Sbjct:    6 YDGDVTVWSPQGRLHQVEYAVEAMKQGSAT-VGIKSETHAVIVALKRAQNDLSSHQK--KVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYDKD-GAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALLALRDT 198          
BLAST of EY692526 vs. ExPASy Swiss-Prot
Match: PSA5_ENCCU (Probable proteasome subunit alpha type-5 OS=Encephalitozoon cuniculi GN=PUP2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.504e-14
Identity = 49/166 (29.52%), Postives = 88/166 (53.01%), Query Frame = 2
Query:  155 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQH-----AYMRPLGVVAMVLSIDEECGPRXS*CDPAGHFFGHXATSAG 637
            + + +  +S EGR+ Q+EYA KA+   G T+IGVR K+ V + ++KK+   L +  SV   + I  ++ L  +G++ D +T+V+++R         YG  + V+ L K+++  S  + +       + RP GV  ++   D E  PR    DP+G +  + A + G
Sbjct:    4 FKQSVNTYSSEGRIHQIEYAMKAMNL-GTTTIGVRTKEFVILCSEKKILSTLQNPKSVVKHYKIYDHIVLGFSGISGDTKTIVKRSRDFCISHTHMYGENISVERLLKYLSSLSLRFGEEDEAKMIFRRPFGVSLIIAGFDTE--PRLYSLDPSGSYISYKAKAIG 166          
BLAST of EY692526 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.343e-12
Identity = 50/175 (28.57%), Postives = 80/175 (45.71%), Query Frame = 2
Query:  155 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRXS*CDPAGHFFGHXATSAGFEGAEAXXFLXKEM 679
            YD     FSP GRLFQVEYA +A+K   VT +G+R      +V  K+  D+L  +     +    +++GL   G+  DAR L    R +       +  ++ V+     + DK+Q  TQ    RP GV  +++  D+  G       P+G+      T+ G     A  +L + +
Sbjct:    6 YDGDTVTFSPTGRLFQVEYALEAIKQGSVT-VGLRSNTHAVLVALKRNADELSSYQK--KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTL 176          
The following BLAST results are available for this feature:
BLAST of EY692526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA3_CAEEL5.390e-1730.26Proteasome subunit alpha type-3 OS=Caenorhabditis ... [more]
PSA1_CAEEL1.201e-1627.41Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]
PSA5_ENCCU2.504e-1429.52Probable proteasome subunit alpha type-5 OS=Enceph... [more]
PSA1_YEAST2.343e-1228.57Proteasome component PRE5 OS=Saccharomyces cerevis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-F02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692526 ID=EY692526; Name=EY692526; organism=Citrus sinensis; type=EST; length=904bp
CCACGCGTCCGGTTTGGTCGTATTTCATTCATACATATAATTACTGTACG
AAGTGCGGATTGATCCGACAAGTAGAACTGCGTGAAGAAGAAAATTGAAA
GAGAGGAATCACTGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGG
AGGATACGATCGTCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTC
AAGTCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATT
GGTGTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCC
GGACAAGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAA
AGTACCTTGGATTGCTGGCAACTGGAATGACAGCTGATGCAAGGACATTG
GTTCAGCAGGCAAGATATGAAGCCGCTGAGTTTCGCTTCAAATATGGATA
TGAAATGCCTGTGGATGTGTTAGCCAAATGGATTGCAGACAAATCACAAG
TATATACTCAACATGCTTATATGAGACCACTTGGTGTAGTTGCTATGGTT
TTGAGTATTGACGAAGAATGTGGACCTCGCCNNTCTTAGTGTGACCCTGC
TGGCCATTTCTTTGGCCACNAGGCAACAAGTGCTGGATTTGAAGGAGCAG
AGGCATTNNATTTCTTGNAGAAAGAGATGAAGAATGATCCTGCGTTTACC
TTTTCAGAAACTGTGCAGACTGCAATTTCCACCCTGCATCAGTCCTGCAA
GAGGATTTTAAGCNANTGAAATTGAGGNTGGCGTGGTGAGCAAGGAGATC
CAGAATCNGAGTTTTGTCCATCCAGGAGATCGATGAACACTGACTGCTTT
AAGTGACCAGATTAGGAGGTGGTTCATGCCCAGCCCAAATGCTGAACCAA
AAAA
back to top