EY692502

Overview
NameEY692502
Unique NameEY692502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692502 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.248e-49
Identity = 92/144 (63.89%), Postives = 114/144 (79.17%), Query Frame = 2
Query:  221 SSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGG-ETLTVAQVAAIATS--STNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRV 643
            S+ D LNWG   E+LKGSHLEEVK MVAEYR+ V+++GG ETLTV++VAA+A       V+LSESAREGV +S  W++++++KG   YGVTTGFGA S+R+T+ G ALQKE++RFLN  IFG  TE SHTLP SATRAAMLVRV
Sbjct:   17 SNTDPLNWGNAVESLKGSHLEEVKGMVAEYREAVIHVGGGETLTVSKVAAVANQYLQAKVDLSESAREGVDSSCKWIVDNIDKGIPIYGVTTGFGANSNRQTQEGLALQKEMVRFLNCAIFGYQTELSHTLPKSATRAAMLVRV 160          

HSP 2 Score: 41.9726 bits (97), Expect = 1.248e-49
Identity = 22/40 (55.00%), Postives = 26/40 (65.00%), Query Frame = 1
Query:  643 NTLXQGYSGIRFEIWKR-SKAAHHXITPCLPLSRTSLLQG 759
            NTL QGYSGIRFEI +  +K  +H +TP LPL  T    G
Sbjct:  161 NTLLQGYSGIRFEILEAITKLLNHNVTPILPLRGTITASG 200          

HSP 3 Score: 22.3274 bits (46), Expect = 1.248e-49
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  744 ITASGDLGPLFYM 782
            ITASGDL PL Y+
Sbjct:  196 ITASGDLIPLSYI 208          
BLAST of EY692502 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.269e-45
Identity = 84/142 (59.15%), Postives = 102/142 (71.83%), Query Frame = 2
Query:  230 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA----TSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRV 643
            D LNWG  A  + GSHL+EVKRMVA++R+P+V + G TL V QVAA+A     +   VEL E AR  VKASS+W++  +  G D YGVTTGFG TSHRRTK+G ALQ EL+R LNAGIFG G++  HTLP    RAAMLVR+
Sbjct:   11 DPLNWGAAAAEMAGSHLDEVKRMVAQFREPLVKIQGATLRVGQVAAVAQAKDAAGVAVELDEEARPRVKASSEWILNCIAHGGDIYGVTTGFGGTSHRRTKDGPALQVELLRHLNAGIFGTGSD-GHTLPSETVRAAMLVRI 151          

HSP 2 Score: 42.3578 bits (98), Expect = 2.269e-45
Identity = 28/60 (46.67%), Postives = 33/60 (55.00%), Query Frame = 1
Query:  643 NTLXQGYSGIRFEIWKR-SKAAHHXITPCLPLSRTSLLQGIWVLFS-TCXTAHGRPILRA 816
            NTL QGYSGIRFEI +  +K  +  +TPCLPL  T    G  V  S       GRP  +A
Sbjct:  152 NTLLQGYSGIRFEILEAITKLLNTGVTPCLPLRGTITASGDLVPLSYIAGLITGRPNAQA 211          
BLAST of EY692502 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.005e-36
Identity = 79/153 (51.63%), Postives = 102/153 (66.67%), Query Frame = 2
Query:  191 GLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEY-RKPVVNLGGETLTVAQVAAIAT-SSTNVEL-SESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVR 640
            GLC   ++  S  D LNW   A+ ++GSH EEVK MV  Y     +++ G++LT++ VAA+A  S   V+L + +A+  V+ SS+WV+  M KGTD+YGVTTGFGATSHRRT  G  LQKELIRFLNAG+ G   E  + L    TRAAMLVR
Sbjct:   19 GLC--TDFGSSGSDPLNWVRAAKAMEGSHFEEVKAMVDSYFGAKEISIEGKSLTISDVAAVARRSQVKVKLDAAAAKSRVEESSNWVLTQMTKGTDTYGVTTGFGATSHRRTNQGAELQKELIRFLNAGVLGKCPE--NVLSEDTTRAAMLVR 167          

HSP 2 Score: 35.039 bits (79), Expect = 6.005e-36
Identity = 25/61 (40.98%), Postives = 31/61 (50.82%), Query Frame = 1
Query:  643 NTLXQGYSGIRFEIWKR-SKAAHHXITPCLPLSRTSLLQGIWVLFS-TCXTAHGRPILRAR 819
            NTL QGYSG+R++I +   K  +  +TP LPL  T    G  V  S       GRP  R R
Sbjct:  169 NTLLQGYSGVRWDILETVEKLLNAWLTPKLPLRGTITASGDLVPLSYIAGLLTGRPNSRVR 229          
BLAST of EY692502 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.027e-32
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 2
Query:  443 MESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRV 643
            MESM+KGTDSYGVTTGFGATSHRRTK GGAL KELIRFLNAGIFG   ES HTL  SATRAAMLVR+
Sbjct:    1 MESMDKGTDSYGVTTGFGATSHRRTKQGGALHKELIRFLNAGIFGTNGESGHTLAPSATRAAMLVRI 67          

HSP 2 Score: 44.2838 bits (103), Expect = 2.027e-32
Identity = 23/40 (57.50%), Postives = 26/40 (65.00%), Query Frame = 1
Query:  643 NTLXQGYSGIRFEIWKR-SKAAHHXITPCLPLSRTSLLQG 759
            NTL QGYSGIRFEI +  +   +H ITPCLPL  T    G
Sbjct:   68 NTLLQGYSGIRFEILEAITSLLNHSITPCLPLRGTITASG 107          

HSP 3 Score: 22.7126 bits (47), Expect = 2.027e-32
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  744 ITASGDLGPLFYM 782
            ITASGDL PL Y+
Sbjct:  103 ITASGDLVPLSYI 115          
The following BLAST results are available for this feature:
BLAST of EY692502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PAL3_PHAVU1.248e-4963.89Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PAL1_ORYSJ2.269e-4559.15Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_PINTA6.005e-3651.63Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]
PALY_PERAE2.027e-3285.07Phenylalanine ammonia-lyase OS=Persea americana GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-D01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692502 ID=EY692502; Name=EY692502; organism=Citrus sinensis; type=EST; length=941bp
CCACGCGTCCGCCCACGCGTCCGAGAATTTCCTTTAGCTCATTCATTCTT
CATCACTCCCATTCATTCTTCTTCTTCTTCTTCTTCTTTCTACAGTTTTG
GTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGATATGGAGATAGG
TGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGAGGGTTTGTGCA
AGAATAACAATTACAATTACAGTTCTGGGGATGCGTTGAACTGGGGAGTG
ATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTGAAGCGTATGGT
GGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGAGACGTTGACCG
TAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATGTGGAGCTGTCG
GAATCTGCCAGGGAAGGCGTCAAGGCCAGCAGTGATTGGGTGATGGAGAG
CATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGGCTTTGGTGCCA
CTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGAAGGAGCTCATT
AGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACAC
GCTACCTCACTCAGCAACAAGGGCAGCCATGCTTGTGAGGGTAACACTCT
TCNTCAGGGCTACTCCGGCATCCGATTTGAAATCTGGAAGCGATCAAAAG
CTGCTCATCACNACATCACTCCATGCCTCCCTCTTTCGCGCACATCACTG
CTTCAGGGGATCTGGGTCCTCTTTTCTACATGCCNGACTGCTCACGGGCG
GCCCATTCTAAGGGCACGGGGCTATGAGAGATCATGATGCCAGGAAGCTC
TAACAGCGGGTTCGGTTCTTGAGTGCAGCTAAGAGGTCTGCTCTGTCATG
GACTGCTGTAGNTCGGCCTGCTTCATGTTCTGTTGAGCTAC
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