FC922773

Overview
NameFC922773
Unique NameFC922773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922773 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.754e-68
Identity = 124/160 (77.50%), Postives = 137/160 (85.62%), Query Frame = -3
Query:  252 RVPILVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 731
            RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVR W            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+ANADAI +G+F+
Sbjct:  281 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of FC922773 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 8.109e-68
Identity = 123/159 (77.36%), Postives = 137/159 (86.16%), Query Frame = -3
Query:  255 RVPILVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 731
            RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVR W            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ANADAI +GNF
Sbjct:  281 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
BLAST of FC922773 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.965e-67
Identity = 121/157 (77.07%), Postives = 136/157 (86.62%), Query Frame = -3
Query:  261 RVPILVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSG 731
            RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVR W            L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ANADAI +G
Sbjct:  276 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of FC922773 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.884e-65
Identity = 121/160 (75.62%), Postives = 135/160 (84.38%), Query Frame = -3
Query:  252 RVPILVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 731
            RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG AN DAI+SG+F+
Sbjct:  281 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
BLAST of FC922773 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.935e-58
Identity = 107/137 (78.10%), Postives = 118/137 (86.13%), Query Frame = -3
Query:  324 PRVPILVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 734
            PRVPI+VTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W           +LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct:  273 PRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409          
BLAST of FC922773 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.346e-46
Identity = 94/147 (63.95%), Postives = 107/147 (72.79%), Query Frame = -3
Query:  294 PRVPILVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAL 734
            PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR W            LVN+++      +  M +  L++YG  +V EQENVKRVQLAD YLS A L
Sbjct:  249 PRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV-AMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394          
BLAST of FC922773 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.056e-39
Identity = 75/140 (53.57%), Postives = 101/140 (72.14%), Query Frame = -3
Query:  312 RVPILVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 731
            RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R++            +VNS EA P F++P  ++  L+E GN+++ EQ+ V   QL D+Y
Sbjct:  150 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289          
BLAST of FC922773 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.909e-39
Identity = 73/140 (52.14%), Postives = 100/140 (71.43%), Query Frame = -3
Query:  312 RVPILVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 731
            RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R++            +VNS E  P F++P  T+  L+E  N +V EQ+ ++  QL D+Y
Sbjct:  150 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289          
BLAST of FC922773 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 44/73 (60.27%), Postives = 45/73 (61.64%), Query Frame = -3
Query:  513 RVPILVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 731
            RVPI+VTGNDFSTLYAPLI                RIGVC GIFR           LVDTFPGQSIDFFGALR
Sbjct:   95 RVPIIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPGQSIDFFGALR 140          
The following BLAST results are available for this feature:
BLAST of FC922773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA1_TOBAC4.754e-6877.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC8.109e-6877.36Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN8.965e-6777.07Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU2.884e-6575.63Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA9.935e-5878.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.346e-4663.95Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP6.056e-3953.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC7.909e-3952.14Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY7.454e-1360.27Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BC10RM1 SLH Citrus sinensis cDNA clone KN0AAM1BC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922773 ID=FC922773; Name=FC922773; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTTTTTTTTTTTTTAACACAAAATTAGAGGATTCTTTCTAATTAAC
AAAGAAATGAAAATGCAACAATATTATTTGAATATCTCACATCCTAAGCA
AAGTGCGACACTTCTCAACCCTTAAAAACAAGGCCTAAAGCGTGTATTGG
CAGCTTCCATCATCACTTCTTGCAGTTGGATCAAAGTTTTCTGCAGTAGG
ATCAGTACATCCTTCAGGAACTGGAACATTCATTTGCTGGGCTGCTTTGC
CATAGAAATTTCCACTCTGAATAGCATCTGCATTAGCTTCACCAAGAGCG
GCCTCACTCAAATACTTGTCAGCCAACTGAACTCTCTTCACATTCTCTTG
CTCTTGCACAATCATGTTTCCGTACTCGAGCAGCTTCTCCATTGTCATCC
TTGGTTGCTCGAATGTTGGGGCTGCTTCCTTTGAGTTCACAAGGCTCTTG
CCAATGCTTCCAACACCAATACCAGAGATCCAATTCCTCACCTCATCATC
ATAGACTCTGGCCCTCAGGGCTCCAAAGAAATCAATGGATTGGCCGGGGA
AGGTGTCAACAAGCTTGACAATGTCGTCATCAGCCACATTGTCATTCCTG
AAGATACCCTTGCACACACCAATACGGTCCTCCCTTGTAGGTGCCCAGTA
GAATTTCTCCATACGACCATCACGGATGAGAGGAGCATACAATGTTGAGA
AGTCATTACCGGTGACTAAGATTGGGACACGGGGGT
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