EY692488

Overview
NameEY692488
Unique NameEY692488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692488 vs. ExPASy Swiss-Prot
Match: CDKL5_MOUSE (Cyclin-dependent kinase-like 5 OS=Mus musculus GN=Cdkl5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.660e-11
Identity = 41/153 (26.80%), Postives = 86/153 (56.21%), Query Frame = 2
Query:  362 NLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGI---KKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKGPDY 811
            N+ ++++I   +GEG +G VL+C  +E  E+VAIK  +     ++ +E  + E+++L+ L + +      V+++  F  R  + +VFE +  ++ + L +      P + V+    QL++ I + H   ++H D+KPEN+L+  ++ +K  D+
Sbjct:    8 NVMNKFEILGVVGEGAYGVVLKCRHKETHEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQEN-----IVELKEAFRRRGKLYLVFEYVEKNMLELLEEMP-NGVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDF 154          
BLAST of EY692488 vs. ExPASy Swiss-Prot
Match: CDKL5_HUMAN (Cyclin-dependent kinase-like 5 OS=Homo sapiens GN=CDKL5 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.660e-11
Identity = 41/153 (26.80%), Postives = 86/153 (56.21%), Query Frame = 2
Query:  362 NLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGI---KKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKGPDY 811
            N+ ++++I   +GEG +G VL+C  +E  E+VAIK  +     ++ +E  + E+++L+ L + +      V+++  F  R  + +VFE +  ++ + L +      P + V+    QL++ I + H   ++H D+KPEN+L+  ++ +K  D+
Sbjct:    8 NVMNKFEILGVVGEGAYGVVLKCRHKETHEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQEN-----IVELKEAFRRRGKLYLVFEYVEKNMLELLEEMP-NGVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDF 154          
BLAST of EY692488 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSJ (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.660e-11
Identity = 44/155 (28.39%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  359 ENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREA----AMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKGPDY 811
            + +  RY     +GEGT+G V +  D +    VAIK +R + KY+E     A+ EI++L++L       +  +++ + F Y+ ++ +VFE + + L   +R  N    P D  +   + +L+ +AF H   ++H D+KP N+L+ +   +K  D+
Sbjct:   13 KRVADRYLKREVLGEGTYGVVFKAVDTKTGNTVAIKKIR-LGKYKEGVNFTALREIKLLKELKD-----SNIIELIDAFPYKGNLHLVFEFMETDLEAVIRDRNIVLSPAD-TKSYIQMMLKGLAFCHKKWVLHRDMKPNNLLIGADGQLKLADF 160          
The following BLAST results are available for this feature:
BLAST of EY692488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
CDKL5_MOUSE7.660e-1126.80Cyclin-dependent kinase-like 5 OS=Mus musculus GN=... [more]
CDKL5_HUMAN7.660e-1126.80Cyclin-dependent kinase-like 5 OS=Homo sapiens GN=... [more]
CDKD1_ORYSJ7.660e-1128.39Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-B11-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692488 ID=EY692488; Name=EY692488; organism=Citrus sinensis; type=EST; length=915bp
CCACGCGTCCGATTTTATTCGTTCGTTTCAATCGCATCAAGATCTCGATC
TCTCTCTTATTTCCTCGCCGTGACCTGCGATCATGGAGATGGAGCGCGTG
ACGGAGTTTCCTTTTTCGAATCTGGATCGGCGTCCTCGTAAGCGAGCGCG
TTTGGGCTGGGACGTGCCTCAGGTACCGAAGGCTCAGGTAGGATTATTTT
GTGGACAAGAGGTTGGGAATGTAACAAGCTTTGCACCTCCAAGAGCTCCC
TCAGACCATGTCACTAGTTCTTCTCTATTTGTAAAGGGATTGGCTCGAAA
TGGTTCTCCCCCATGGCGTGAGGATGACAAAGATGGCCATTATATGTTTG
CGCTTGGAGAAAATTTAACTTCTCGCTATAAGATTCACAGCAAAATGGGT
GAAGGAACCTTCGGTCAGGTTTTGGAATGCTGGGATCGTGAGAGGAAAGA
AATGGTAGCCATTAAAATTGTTCGTGGGATCAAGAAATATCGTGAAGCTG
CTATGATAGAAATTGAAGTACTTCAACAACTTGCAAAACATGATAAAGGT
GGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATAT
CTGTATTGTGTTTGAGAAGCTTGGATCTAGCTTATACGATTTTCTACGGA
AAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGCCAGA
CAACTGTTGGAATGTATAGCATTTATGCATGATCTGTGTATGATACATAC
TGACTTAAAGCCTGAGAACGTTCTACTTGTTTCTTCCGAGTATATTAAGG
GTCCTGACTACAGAAGTCTTCGCACACACAAAAGATTCTTCTACTTTAAA
AGATGCAAAGTCAGTGCTATTAAGTGATTGATTGGCAGCACACTATGAGC
GCCAGATCGACTACT
back to top