EY692453

Overview
NameEY692453
Unique NameEY692453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1007
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.045e-11
Identity = 36/121 (29.75%), Postives = 64/121 (52.89%), Query Frame = 1
Query:  190 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 543
            A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YPFKPP     T   +    +   ICL I       W P+ +V   L+++ + +   NP+  L
Sbjct:    2 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLLCDPNPDDPL 119          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.045e-11
Identity = 36/121 (29.75%), Postives = 64/121 (52.89%), Query Frame = 1
Query:  190 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 543
            A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YPFKPP     T   +    +   ICL I       W P+ +V   L+++ + +   NP+  L
Sbjct:    2 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLLCDPNPDDPL 119          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.365e-11
Identity = 37/119 (31.09%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  190 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 534
            A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ + GG++   I  P +YPFKPP     T    PN    +   ICL I     + W P+ ++   L+++ + + T+PN
Sbjct:    2 ALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPN--INSNGSICLDILR---DQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.365e-11
Identity = 44/146 (30.14%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  196 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGALG---SLDYKKEERRALAIKSREAAPKF 615
            KRI++E++ +  +P    ++ P E+N+  ++  + GP  + +EGG +H  + LP EYP  PP+   LT   +   +   +ICLS      + W P+  +RT L+++ A M   NP+  L    +  +K+ E +A+A  +RE   K+
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLK---KDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIA-NAREWTKKY 146          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.782e-11
Identity = 44/176 (25.00%), Postives = 82/176 (46.59%), Query Frame = 1
Query:  202 ILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSI-----SNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIH----EYM---LSKAPPVP 687
            ++ E + +  NPS++F     E ++ EW   +RGP DT +EGG++  ++  P EYP+ PP     +   +       K+C+SI     +      W P+  + T L+++I+ +      +  ++D  K  R+ +  +  E+ P       +K +DE      EY    +S  P +P
Sbjct:    6 LMAEYRHLIENPSENFKISVNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKLMHKEDLESYPMEVKRTVKKSLDECSPEDIEYFKNAVSNVPAIP 181          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.782e-11
Identity = 39/113 (34.51%), Postives = 61/113 (53.98%), Query Frame = 1
Query:  199 RILQEVKEMQSNP--SDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 519
            R+ +E KE+Q       D   +  + NIF+W   I+GP +T +EGG++     +P  YP +PP    LT    PN  F+T  +ICL I  +    W P+W++++   A+IA M
Sbjct:    7 RLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKT-GEICLDILKN---AWSPAWTLQSVCRAIIALM 115          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.782e-11
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  190 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 540
            A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +YP  PP            + P+GR      +C+SI  H P           E W P  SV   L+++++ +  P + +GA
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 136          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.782e-11
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  190 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 540
            A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +YP  PP            + P+GR      +C+SI  H P           E W P  SV   L+++++ +  P + +GA
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 136          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.782e-11
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  190 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 540
            A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +YP  PP            + P+GR      +C+SI  H P           E W P  SV   L+++++ +  P + +GA
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 136          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.782e-11
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  190 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 540
            A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +YP  PP            + P+GR      +C+SI  H P           E W P  SV   L+++++ +  P + +GA
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 136          
The following BLAST results are available for this feature:
BLAST of EY692453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
UB2D1_HUMAN1.045e-1129.75Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN1.045e-1129.75Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC4_SCHPO1.365e-1131.09Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC13_SCHPO1.365e-1130.14Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC_ASFWA1.782e-1125.00Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC21_ARATH1.782e-1134.51Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UB2G2_PONAB1.782e-1131.65Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE1.782e-1131.65Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN1.782e-1131.65Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN1.782e-1131.65Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-G08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692453 ID=EY692453; Name=EY692453; organism=Citrus sinensis; type=EST; length=1007bp
TCGGGGTCCGGGTCGGTATTCCCGGGTCGACCACGCGTCCGCGGACGCGT
GGGCTTTGCAATCGGCTTTCCTACAAAGACTTTTGTCTGCTCGTTCGCAT
ACAAAGTCCTGATAGGACGGTGGACGTGAACCGATCGAAATCAGATCTGA
AATCCAATGGCGGAAGACAGGTACAATTTGAAAAATCCTGCGGTGAAGAG
AATCCTACAGGAGGTCAAAGAGATGCAATCAAATCCGTCAGATGATTTCA
TGAGCCTCCCTCTCGAGGAGAATATATTTGAATGGCAATTTGCGATCAGG
GGACCGGGTGATACTGAATTTGAAGGTGGGATTTATCATGGTCGGATTCA
GTTGCCTGCGGAATACCCATTCAAGCCTCCTTCATTTATGCTCTTAACAC
CAAATGGGCGTTTTGAAACTCAGACCAAAATATGCTTAAGCATTTCGAAT
CATCATCCGGAGCACTGGCAACCATCTTGGAGTGTGAGGACTGCTCTTGT
AGCACTAATTGCTTTCATGCCCACCAATCCAAATGGTGCTTTGGGCTCAC
TAGATTATAAGAAGGAAGAGAGGCGTGCTCTGGCCATCAAATCTCGTGAA
GCTGCCCCCAAATTTGGGACTCCTGAACGTCAAAAACTCATTGATGAGAT
CCATGAATATATGTTAAGCAAGGCACCCCCTGTCCCTCAGCTCCACACCT
GGTGAAGAACAGCCTGGCAACAGGGAGGGTGAAACACAGGCAAAGTTCCC
TAGACGCCTTGGTTGCGGGGGCTGGGGGAAGGGGTCCCCACCCCCGTAGG
GGAAAGGATTTTTTGGAAAAAATTTCAGGAGAGGTTCCCGGCCCACCGTG
AACCCCCCCCCCCGAATGGGGTGGAAATATAAAAAGCAGTTTCTGGCCAC
AACCCCCCCAGGAAGCCCCACCTTCCCACCCAAAACGCCAGAAACCTAGG
GGTTCTAAAAAAGCCCTGGGTAAAAAGAAGATGCGGGTATCTCAAGGGAG
AACGCGG
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