EY692453

Overview
NameEY692453
Unique NameEY692453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1007
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.185e-11
Identity = 37/123 (30.08%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  190 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 543
            A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YPFKPP     T    PN    +   ICL I       W P+ ++   L+++ + +   NP+  L
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPL 119          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.185e-11
Identity = 37/123 (30.08%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  190 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 543
            A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YPFKPP     T    PN    +   ICL I       W P+ ++   L+++ + +   NP+  L
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPL 119          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.185e-11
Identity = 39/123 (31.71%), Postives = 63/123 (51.22%), Query Frame = 1
Query:  190 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 543
            A+KRI +E+ ++  +P     + P+ E++F WQ  I GP D+ ++GG +   I  P EYPFKPP     T    PN    +   ICL I       W P+ ++   L+++ + +   NP+  L
Sbjct:    2 ALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPN--VNSNGSICLDILR---SQWSPALTISKVLLSISSLLCDPNPDDPL 119          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.185e-11
Identity = 39/123 (31.71%), Postives = 63/123 (51.22%), Query Frame = 1
Query:  190 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 543
            A+KRI +E+ ++  +P     + P+ E++F WQ  I GP D+ ++GG +   I  P EYPFKPP     T    PN    +   ICL I       W P+ ++   L+++ + +   NP+  L
Sbjct:    2 ALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPN--VNSNGSICLDILR---SQWSPALTISKVLLSISSLLCDPNPDDPL 119          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.772e-11
Identity = 37/123 (30.08%), Postives = 65/123 (52.85%), Query Frame = 1
Query:  190 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 543
            A+KRI +E++++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YPFKPP     T    PN    +   ICL I       W P+ ++   L+++ + +   NP+  L
Sbjct:    2 ALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPL 119          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.845e-11
Identity = 34/119 (28.57%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  196 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPP--SFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 543
            KRI +E+ +++ +P     + P+ ++++ WQ +I GP D+ + GG++   I  P +YPFKPP  SF     +        ICL I     + W P+ ++   L+++ + +   NP+  L
Sbjct:    5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILK---DQWSPALTLSKVLLSICSLLTDANPDDPL 120          
BLAST of EY692453 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.845e-11
Identity = 41/121 (33.88%), Postives = 62/121 (51.24%), Query Frame = 1
Query:  190 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 543
            A +RI  E + M S  S  F       NI+EW   IRGP  T +EGG+++  I+ P +YPFKPP F   TP  +     +  IC++I     + W P+  V   L++++  +   NP+  L
Sbjct:    9 AAQRIAMEYRAMISKESL-FSIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILK---DKWTPALMVEKVLLSILLLLEKPNPDDPL 125          
The following BLAST results are available for this feature:
BLAST of EY692453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
UB2D2_HUMAN5.185e-1130.08Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN5.185e-1130.08Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
U2D2B_RAT5.185e-1131.71Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE5.185e-1131.71Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBCD1_DROME6.772e-1130.08Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC4_YEAST8.845e-1128.57Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC31_ARATH8.845e-1133.88Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-G08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692453 ID=EY692453; Name=EY692453; organism=Citrus sinensis; type=EST; length=1007bp
TCGGGGTCCGGGTCGGTATTCCCGGGTCGACCACGCGTCCGCGGACGCGT
GGGCTTTGCAATCGGCTTTCCTACAAAGACTTTTGTCTGCTCGTTCGCAT
ACAAAGTCCTGATAGGACGGTGGACGTGAACCGATCGAAATCAGATCTGA
AATCCAATGGCGGAAGACAGGTACAATTTGAAAAATCCTGCGGTGAAGAG
AATCCTACAGGAGGTCAAAGAGATGCAATCAAATCCGTCAGATGATTTCA
TGAGCCTCCCTCTCGAGGAGAATATATTTGAATGGCAATTTGCGATCAGG
GGACCGGGTGATACTGAATTTGAAGGTGGGATTTATCATGGTCGGATTCA
GTTGCCTGCGGAATACCCATTCAAGCCTCCTTCATTTATGCTCTTAACAC
CAAATGGGCGTTTTGAAACTCAGACCAAAATATGCTTAAGCATTTCGAAT
CATCATCCGGAGCACTGGCAACCATCTTGGAGTGTGAGGACTGCTCTTGT
AGCACTAATTGCTTTCATGCCCACCAATCCAAATGGTGCTTTGGGCTCAC
TAGATTATAAGAAGGAAGAGAGGCGTGCTCTGGCCATCAAATCTCGTGAA
GCTGCCCCCAAATTTGGGACTCCTGAACGTCAAAAACTCATTGATGAGAT
CCATGAATATATGTTAAGCAAGGCACCCCCTGTCCCTCAGCTCCACACCT
GGTGAAGAACAGCCTGGCAACAGGGAGGGTGAAACACAGGCAAAGTTCCC
TAGACGCCTTGGTTGCGGGGGCTGGGGGAAGGGGTCCCCACCCCCGTAGG
GGAAAGGATTTTTTGGAAAAAATTTCAGGAGAGGTTCCCGGCCCACCGTG
AACCCCCCCCCCCGAATGGGGTGGAAATATAAAAAGCAGTTTCTGGCCAC
AACCCCCCCAGGAAGCCCCACCTTCCCACCCAAAACGCCAGAAACCTAGG
GGTTCTAAAAAAGCCCTGGGTAAAAAGAAGATGCGGGTATCTCAAGGGAG
AACGCGG
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