EY692445

Overview
NameEY692445
Unique NameEY692445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692445 vs. ExPASy Swiss-Prot
Match: MSBA_VIBVY (Lipid A export ATP-binding/permease protein msbA OS=Vibrio vulnificus (strain YJ016) GN=msbA PE=3 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.592e-51
Identity = 107/208 (51.44%), Postives = 141/208 (67.79%), Query Frame = 1
Query:   31 IPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 654
            IP GKTVALVG SGSGKST+  L  RFYD DSG + LD +++  ++L  LR Q  LVSQ   LFN+TI  NIAY                 ++A  FIS + +G +T VGE G  LSGGQ+QR+AIARA+L++  +L+LDEATSALD ESER +Q AL+ +  N+T +V+AHRL+TI+ AD I V+ +G + E+GSH  L++  DGAY
Sbjct:  366 IPRGKTVALVGRSGSGKSTIANLFTRFYDVDSGEIQLDGVDVRDYELKNLRTQFALVSQNVHLFNDTIANNIAYAAGDKYSREDIERAAELAHAMEFISKMENGLDTVVGENGASLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQSALDELQKNKTVLVIAHRLSTIEKADQILVIDDGAVVERGSHSELIE-KDGAY 572          
BLAST of EY692445 vs. ExPASy Swiss-Prot
Match: MSBA_VIBCH (Lipid A export ATP-binding/permease protein msbA OS=Vibrio cholerae GN=msbA PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.592e-51
Identity = 109/209 (52.15%), Postives = 140/209 (66.99%), Query Frame = 1
Query:   28 SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 654
            SIP GKTVALVG SGSGKST+  L  RFYD DSG + LD  ++  +KL+ LR+   LVSQ   LFN+TI  NIAY  +G             ++A  FI  +P G +T +GE G  LSGGQ+QR+AIARA+L++  +L+LDEATSALD ESER +Q AL+ +  N+T +V+AHRL+TI+ AD I VV  G I E+G H  L+   DGAY
Sbjct:  365 SIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL-AQDGAY 572          
BLAST of EY692445 vs. ExPASy Swiss-Prot
Match: MSBA_SODGM (Lipid A export ATP-binding/permease protein msbA OS=Sodalis glossinidius (strain morsitans) GN=msbA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.592e-51
Identity = 109/203 (53.69%), Postives = 141/203 (69.46%), Query Frame = 1
Query:   25 LSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 633
            LSIP+G TVALVG SGSGKST+  L+ RFYD   G +LLD  +L  +KL+ LR Q+ LVSQ   LFN+TI  NIAY ++              + A +FI  +  G +T +GE GV LSGGQ+QRIAIARA+L++  IL+LDEATSALD ESER +Q AL+ +  NRT++V+AHRL+TI+ AD I VV  G I E+G+H+ LM
Sbjct:  364 LSIPTGHTVALVGRSGSGKSTIANLLTRFYDIQQGQILLDGTDLRAYKLASLRNQVALVSQNVHLFNDTIANNIAYARKATYSRKQIENAARMAYAMDFIEKMDQGLDTVIGENGVLLSGGQRQRIAIARALLRDCPILILDEATSALDTESERAIQKALDALQKNRTSLVIAHRLSTIEKADEILVVVEGRIVERGNHEELM 566          
BLAST of EY692445 vs. ExPASy Swiss-Prot
Match: MSBA_PSEF5 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=msbA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.592e-51
Identity = 109/202 (53.96%), Postives = 139/202 (68.81%), Query Frame = 1
Query:   28 SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 633
            SI  GK VALVG SGSGKST+  LI RFY  D G +LLD  E+  F+L  LR+ +  V+Q   LF++T+  NIAYG   G            + A +FI+ LP G +T VGE GV LSGGQ+QR+AIARA+LKN  +L+LDEATSALD ESER +Q AL++VM  RTT+V+AHRL+TI+ AD+I V+  G I E+GSH  L+
Sbjct:  377 SIEPGKMVALVGRSGSGKSTLANLIPRFYHHDKGQILLDGTEVEDFRLLNLRRHIAQVTQHVTLFSDTVANNIAYGDLAGAPREDIEKAAADAYAMDFIAQLPEGLDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDKVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGSHAQLL 578          
BLAST of EY692445 vs. ExPASy Swiss-Prot
Match: MSBA_AZOSE (Lipid A export ATP-binding/permease protein msbA OS=Azoarcus sp. (strain EbN1) GN=msbA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.592e-51
Identity = 105/202 (51.98%), Postives = 139/202 (68.81%), Query Frame = 1
Query:   28 SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 633
            ++  G+ +ALVG SGSGKST+  LI RFY  D G +L+D +++  + L  LR+ + LV+Q+  LFN+T+  NIAYG   G              A  FI  LP G++T +GE GV LSGGQ+QR+AIARA+LKN  IL+LDEATSALD ESER +Q AL RVM  RTT+V+AHRL+TI+ AD+I V+ +G I E+GSH  L+
Sbjct:  376 TVEPGQMIALVGRSGSGKSTLANLIPRFYHHDRGQILIDGVDVEDYTLKNLRRHIALVTQQVTLFNDTVANNIAYGDLAGLPRAAVEAAAEAGYAKEFIDRLPQGFDTLIGENGVTLSGGQRQRLAIARALLKNAPILILDEATSALDTESERHIQAALHRVMQARTTLVIAHRLSTIEQADVIMVMDHGRIVERGSHAELL 577          
BLAST of EY692445 vs. ExPASy Swiss-Prot
Match: MSBA_VIBVU (Lipid A export ATP-binding/permease protein msbA OS=Vibrio vulnificus GN=msbA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 2.079e-51
Identity = 107/208 (51.44%), Postives = 141/208 (67.79%), Query Frame = 1
Query:   31 IPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 654
            IP GKTVALVG SGSGKST+  L  RFYD DSG + LD +++  ++L  LR Q  LVSQ   LFN+TI  NIAY                 ++A  FIS + +G +T VGE G  LSGGQ+QR+AIARA+L++  +L+LDEATSALD ESER +Q AL+ +  N+T +V+AHRL+TI+ AD I V+ +G + E+GSH  L++  DGAY
Sbjct:  366 IPRGKTVALVGRSGSGKSTIANLFTRFYDVDSGEIQLDGVDVRDYELKNLRTQFALVSQNVHLFNDTIANNIAYAAGDKYSREDIERAAELAHAMEFISKMENGLDTMVGENGASLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQSALDELQKNKTVLVIAHRLSTIEKADQILVIDDGSVVERGSHSELIE-KDGAY 572          
BLAST of EY692445 vs. ExPASy Swiss-Prot
Match: LKTB_MANGL (Leukotoxin translocation ATP-binding protein lktB OS=Mannheimia glucosida GN=lktB PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 2.079e-51
Identity = 104/217 (47.93%), Postives = 146/217 (67.28%), Query Frame = 1
Query:    4 SIFRNSCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 654
            +I  N  L I  G+ + +VG SGSGKST+  L++RFY P++G VL+D  +L     +WLR+Q+G+V Q+ VL N +IR NIA  + G             + AH+FIS L  GY T VGE+G  LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++   ++++   RT +++AHRL+T+KNAD I V++ G I EQG H  L++ ++G Y
Sbjct:  484 TILNNVNLEIKKGEVIGIVGRSGSGKSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIALSEPG-MSMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEIVEQGKHHELLQNSNGLY 699          
BLAST of EY692445 vs. ExPASy Swiss-Prot
Match: Y4GM_RHISN (Uncharacterized ABC transporter ATP-binding protein y4gM OS=Rhizobium sp. (strain NGR234) GN=NGR_a03510 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.715e-51
Identity = 106/216 (49.07%), Postives = 147/216 (68.06%), Query Frame = 1
Query:    7 IFRNSCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 654
            +F+N  ++ P+GKT ALVG SG+GKS++I LI R YDPD G V +D  +L       LR ++G V Q+  LF+ TI+ NI+ G++G             +NAH+FI  +PHGY+T VGE G++LSGGQKQRI IARA+L+N +IL+ DEATSALD+ESE  ++ AL R+   RTT+++AHRL+T+  AD I V++ G +AEQG    L+   DG Y
Sbjct:  361 LFQNLNVTFPAGKTTALVGPSGAGKSSIINLIMRLYDPDVGSVTVDGHDLKDVTFRSLRDRIGFVGQDTFLFSGTIKYNISLGREGASDEEIIEAAKT-ANAHDFIMKMPHGYDTEVGENGIKLSGGQKQRITIARAMLRNAEILIFDEATSALDSESEIQIRQALARLTRKRTTIMIAHRLSTVTAADNIVVMEGGQVAEQGPQGRLLS-QDGVY 574          
BLAST of EY692445 vs. ExPASy Swiss-Prot
Match: MSBA_RHOFD (Lipid A export ATP-binding/permease protein msbA OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=msbA PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.715e-51
Identity = 109/202 (53.96%), Postives = 141/202 (69.80%), Query Frame = 1
Query:   31 IPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 636
            I +G+TVALVG SG GKST+ ALI RFY   SG VL+D I++    L+ LRQ + LVSQ  +LFN+T+  NIAYG                +NA +FI  LP+G +T +GE G +LSGGQ+QR+AIARA+LK+  IL+LDEATSALD ESER VQ AL  +M NRTT+V+AHRL+TI++AD I V+  G I E G+H  L++
Sbjct:  367 ITAGQTVALVGASGGGKSTISALIPRFYPVTSGRVLVDGIDINDITLASLRQNIALVSQNVILFNDTVGANIAYGSLQTCSRDDVIRAARAANAWDFIEQLPNGLDTPIGENGAKLSGGQRQRLAIARALLKDAPILILDEATSALDTESERQVQAALAVLMKNRTTLVIAHRLSTIEHADCILVLDQGRIVETGTHAELLR 568          
BLAST of EY692445 vs. ExPASy Swiss-Prot
Match: MSBA_PSEAE (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas aeruginosa GN=msbA PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.715e-51
Identity = 103/198 (52.02%), Postives = 139/198 (70.20%), Query Frame = 1
Query:   40 GKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 633
            G+ +ALVG SGSGKST+  L+ RFY  + G +LLD +E+  ++L  LR+ + LV+Q+  LFN+++  NIAYG   G            +NA  FI  LP G++T VGE GV LSGGQ+QR+AIARA+LK+  +L+LDEATSALD ESER +Q AL+ VM  RTT+V+AHRL+TI+ AD+I V+  G I E+GSH  L+
Sbjct:  383 GQMIALVGRSGSGKSTLANLVPRFYQHNDGKILLDGVEVEDYRLRNLRRHIALVTQQVTLFNDSVANNIAYGDLAGAPREEIERAAKAANAKEFIDNLPQGFDTEVGENGVLLSGGQRQRLAIARALLKDAPLLILDEATSALDTESERHIQAALDEVMKGRTTLVIAHRLSTIEKADLILVMDQGQIVERGSHAELL 580          
The following BLAST results are available for this feature:
BLAST of EY692445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MSBA_VIBVY1.592e-5151.44Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_VIBCH1.592e-5152.15Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SODGM1.592e-5153.69Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSEF51.592e-5153.96Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_AZOSE1.592e-5151.98Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_VIBVU2.079e-5151.44Lipid A export ATP-binding/permease protein msbA O... [more]
LKTB_MANGL2.079e-5147.93Leukotoxin translocation ATP-binding protein lktB ... [more]
Y4GM_RHISN2.715e-5149.07Uncharacterized ABC transporter ATP-binding protei... [more]
MSBA_RHOFD2.715e-5153.96Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSEAE2.715e-5152.02Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-F07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692445 ID=EY692445; Name=EY692445; organism=Citrus sinensis; type=EST; length=944bp
TGTTCAATTTTTAGAAATTCATGCTTGAGCATCCCATCTGGAAAGACTGT
TGCTCTTGTTGGAGAGAGTGGTAGTGGAAAATCAACCGTCATTGCCCTTA
TAGAGAGATTCTATGATCCTGATTCTGGTCATGTACTTCTAGATAATATT
GAATTACCGAAGTTCAAACTAAGTTGGTTGAGGCAACAGATGGGTTTGGT
CAGCCAAGAGCCGGTACTCTTCAATGAAACCATCCGAACCAACATAGCCT
ATGGCAAACAAGGAGGAGCTACCGAAGAGGAGATCATTGCGGCTACAGAA
GCATCAAATGCACACAACTTCATAAGTGCATTGCCACATGGCTACGAGAC
CAATGTTGGGGAACGAGGAGTGCAGCTATCCGGTGGGCAGAAGCAGAGAA
TTGCCATAGCAAGAGCTGTATTAAAGAACCCAAAAATTCTTTTGCTTGAT
GAGGCAACAAGTGCACTGGATGCAGAATCAGAGCGTGTAGTACAAGATGC
ATTGGAGAGAGTGATGGTTAACAGGACAACTGTGGTTGTAGCTCACCGCC
TTACCACTATAAAAAATGCTGATATAATAGCTGTAGTGAAGAATGGTGTG
ATTGCAGAGCAGGGAAGCCATGATGCACTGATGAAAATCACTGATGGGGC
TTATGCTTCCTTGGTAGCTCTCCATGTGAGCTCATCATAAGGAGAAGCAG
AGTGCGTTACCAATAATTGAACACTTGACTTCATCTGTCCCGGGGCCCTC
ACCGTGGAAACTGAATTTTTTGTCAGCAGCAGTTTATTTTTGGCCCACCT
TTTTTACCTACCTTTAAAAAGTAGGAAACTATCTTTACCCTTTTCCCAAT
TTTCAAGAAAGGGAAATTTGAAAAAACTTTTGGAATTTTGGTATGAAATT
TTCCCTTTTAAAAAAATTTTTGAAAGCAATTTAACCCACGGGGA
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