EY692410

Overview
NameEY692410
Unique NameEY692410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length959
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: CENPA_SCHPO (Histone H3-like centromeric protein cnp1 OS=Schizosaccharomyces pombe GN=cnp1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.804e-27
Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 2
Query:  167 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF----KTD--LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            RYRPGT ALREIRKYQ+ST+LLI++LPF R+VREI+ +F     TD  LR+QS A+  LQEAAEA+LV LFEDTNLCAIHAKRVTIM +D+Q
Sbjct:   21 RYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQ 112          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: CENPA_ASHGO (Histone H3-like centromeric protein CSE4 OS=Ashbya gossypii GN=CSE4 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.158e-27
Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 2
Query:  116 KAARKSAP--TTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            + AR + P  T    KKP RYRP  VAL+EIR+YQ+STELLI ++PF RLV+E+   F T    +R+QS A+LALQEA+EAY+VGL E TNL A+HAKRVT+M KD+Q
Sbjct:   87 RPARPARPRETRRIAKKPQRYRPSDVALQEIRRYQRSTELLISRMPFARLVKEVTDQFTTVDQQMRWQSMAILALQEASEAYIVGLLEHTNLLALHAKRVTVMRKDMQ 194          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: CENPA_YARLI (Histone H3-like centromeric protein CSE4 OS=Yarrowia lipolytica GN=CSE4 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.392e-26
Identity = 68/118 (57.63%), Postives = 84/118 (71.19%), Query Frame = 2
Query:   83 GGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT----DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            GG  P  Q       +   TT  + KP RY+PG  AL+EIR+YQ+ TELLI KLPF R+VRE+A ++      +L++QS A+LALQEAAEA+LV LFED NLCAIHAKRVTIM KD+Q
Sbjct:   21 GGLHPLGQTRKTLPGERRDTTQKITKP-RYKPGQKALKEIRRYQRGTELLIAKLPFARVVREVALNYLGSEYGNLQWQSMALLALQEAAEAFLVHLFEDVNLCAIHAKRVTIMQKDMQ 137          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: CENPA_YEAST (Histone H3-like centromeric protein CSE4 OS=Saccharomyces cerevisiae GN=CSE4 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.302e-24
Identity = 57/89 (64.04%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  167 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            +Y P  +AL EIRKYQ+ST+LLI K+PF RLV+E+  +F T   DLR+QS A++ALQEA+EAYLVGL E TNL A+HAKR+TIM KD+Q
Sbjct:  131 KYTPSELALYEIRKYQRSTDLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQ 219          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: CENPA_KLULA (Histone H3-like centromeric protein CSE4 OS=Kluyveromyces lactis GN=CSE4 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.949e-24
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  167 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            RY+P  +AL EIRKYQ+ST+LLI ++PF RLV+E+   F T+   LR+QS A++ALQEA+EAYLVGL E TNL A+HAKR+TIM KD+Q
Sbjct:   86 RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQ 174          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: CENPA_XENTR (Histone H3-like centromeric protein A OS=Xenopus tropicalis GN=cenpa PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.464e-24
Identity = 65/123 (52.85%), Postives = 83/123 (67.48%), Query Frame = 2
Query:   65 TARKSTGG-KAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF--QSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            T+ +S G   AP ++ A +A  K            R+RPGT AL EIRKYQKSTELLIRK PF RLVRE+   +   L +  QS A++ALQEA+EA+LV LFED+ LC++HAKRVT+  +DIQ
Sbjct:   26 TSTRSPGRPSAPEQRKAPRATPKK-----------RFRPGTRALMEIRKYQKSTELLIRKAPFSRLVREVCMTYACGLNYSWQSMALMALQEASEAFLVRLFEDSYLCSLHAKRVTLYVQDIQ 137          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: CENPA_XENLA (Histone H3-like centromeric protein A OS=Xenopus laevis GN=cenpa PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.464e-24
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 2
Query:   80 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF--QSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            T  + P  Q   +A+R S       KK  R+RPGT AL EIRKYQKSTELLIRK PF RLVRE+   +   + +  QS A++ALQEA+EA+LV LFED+ LC++HAKRVT+  +DIQ
Sbjct:   29 TSPRRPHAQQQRRASRASP------KK--RFRPGTRALMEIRKYQKSTELLIRKAPFSRLVREVCMTYACGMNYNWQSMALMALQEASEAFLVRLFEDSYLCSLHAKRVTLYVQDIQ 137          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: CENPA_KLUMA (Histone H3-like centromeric protein CSE4 OS=Kluyveromyces marxianus GN=CSE4 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.464e-24
Identity = 55/89 (61.80%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  167 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            +Y+P  +AL EIRKYQ+ST+LLI ++PF RLV+E+   F +D   LR+QS A++ALQEA+EAYLVGL E TNL A+HAKR+TIM KD+Q
Sbjct:   94 KYKPSDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFASDEEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQ 182          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: CENPA_CANGA (Histone H3-like centromeric protein CSE4 OS=Candida glabrata GN=CSE4 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.190e-23
Identity = 54/93 (58.06%), Postives = 72/93 (77.42%), Query Frame = 2
Query:  155 KKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            K+   + P  +A+ EI KYQ+ST LLI+K+PF +LV+E+ ++F     DLR+QS A+LALQEA+EAYLVGL E TNL A+HAKR+TIM KD+Q
Sbjct:  138 KEKRNFAPSKLAMYEIEKYQRSTALLIQKIPFAKLVKEVTEEFAGESQDLRWQSMAILALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQ 230          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: CENPA_SACSE (Histone H3-like centromeric protein CSE4 OS=Saccharomyces servazzii GN=CSE4 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.334e-23
Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 2
Query:  155 KKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            K   RYRP  +AL EIRKYQ+ST+LLI K+PF RLV+E+  +F  +   L++ S A+LALQEA+EAYLVGL E  NL A+HAKR+T+M KD+Q
Sbjct:  191 KTATRYRPSDLALYEIRKYQQSTDLLISKIPFARLVKEVTDNFILENQHLQWHSMAILALQEASEAYLVGLLEHANLLALHAKRITLMKKDVQ 283          
The following BLAST results are available for this feature:
BLAST of EY692410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
CENPA_SCHPO2.804e-2770.65Histone H3-like centromeric protein cnp1 OS=Schizo... [more]
CENPA_ASHGO8.158e-2759.26Histone H3-like centromeric protein CSE4 OS=Ashbya... [more]
CENPA_YARLI1.392e-2657.63Histone H3-like centromeric protein CSE4 OS=Yarrow... [more]
CENPA_YEAST1.302e-2464.04Histone H3-like centromeric protein CSE4 OS=Saccha... [more]
CENPA_KLULA4.949e-2462.92Histone H3-like centromeric protein CSE4 OS=Kluyve... [more]
CENPA_XENTR6.464e-2452.85Histone H3-like centromeric protein A OS=Xenopus t... [more]
CENPA_XENLA6.464e-2454.70Histone H3-like centromeric protein A OS=Xenopus l... [more]
CENPA_KLUMA6.464e-2461.80Histone H3-like centromeric protein CSE4 OS=Kluyve... [more]
CENPA_CANGA4.190e-2358.06Histone H3-like centromeric protein CSE4 OS=Candid... [more]
CENPA_SACSE9.334e-2359.14Histone H3-like centromeric protein CSE4 OS=Saccha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-C03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692410 ID=EY692410; Name=EY692410; organism=Citrus sinensis; type=EST; length=959bp
CCACGCGTCCGGAGAAATTGAGTGGAAGAGTTGACCATACTCAGAGATGG
CCCGTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAGGCTCCTAGG
AAGCAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGG
TGTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAA
TTCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTC
CAGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTT
CCAGAGCCATGCAGTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTG
TTGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTC
ACTATTATGCCCAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCG
TGCTTAAGCGTAATTGCTGCTTGCTTCAATTGAATGACTGGAAGGGAAGG
GGGAAGTTGTAATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGTAGATA
GGGGTAGGATTCCAGTAGTTATTAGAATATGGCTTTTGTCCTCATCTGGG
TTTTGTTTTTTGGTGGTGTTTTATAATGTCTATTTGTTGATGATGGGGAT
TTTAATTTCCCCAAGGAAACAGGCTTTTTGGGGTCTTTTTGATACCCTGT
TGCCACAAAAGAGGTGGGGGATGAATCAAGATTAATTTGGGGGAAGAAAC
AAAAGCTAAGGTTGTATAATAAATCAAAAAAACATTATAATTATAGTGTT
ATAACGAACAACCTTAACATAAAAGTGAAAACAAAAACACTGGTACGCAC
TTTTCAAAAGTAATCACATATTTCACTACATAAGAACATTAATCTAGTAA
CAAATTATTTAGAATTTGGCACGCGGACATATTTTTTAATCCTAAGTAAC
CTCGCTTAT
back to top