EY692410

Overview
NameEY692410
Unique NameEY692410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length959
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: H3L1_LILLO (Histone H3-like 1 OS=Lilium longiflorum GN=gH3 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 2.630e-17
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 2
Query:   59 KQTARKSTGGKAPRKQLATKAARK--SAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            +Q   +    +APR Q   +  ++  +AP     ++P R+RPGTVALREIR+ Q+S   LI   PF RLVRE+A +F  D RF +   + L+E  E  LV  F +  +C+IHAKR+ I  KD +
Sbjct:   20 RQQPTEEPQDEAPRNQGRQQQQQRPPAAP-----RRPRRFRPGTVALREIRRIQRSNVPLIPHSPFMRLVRELAAEFLDDCRFAAETFIMLKEVVEDELVNHFGNVQICSIHAKRIIITVKDFK 138          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: H3L2_LILLO (Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 9.996e-17
Identity = 53/101 (52.48%), Postives = 61/101 (60.40%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKS-APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY 346
            MAR K TAR STGGKAPRKQLA+KA RK+  P T GVK+P     G                  RKLPFQ LVR+I QD KT LRF++H+V  L+E  E Y
Sbjct:    1 MARMKHTARMSTGGKAPRKQLASKALRKAPPPPTKGVKQPTTTTSGKWRFARFH----------RKLPFQGLVRKIWQDLKTHLRFKNHSVPPLEEVTEVY 91          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: H32_TETTR (Histone H3.2 (Fragment) OS=Tetrahymena tropicalis PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.920e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 169
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: H32_TETSO (Histone H3.2 (Fragment) OS=Tetrahymena sonneborni PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.920e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 169
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: H32_TETRO (Histone H3.2 (Fragment) OS=Tetrahymena rostrata PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.920e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 169
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: H32_TETPR (Histone H3.2 (Fragment) OS=Tetrahymena paravorax PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.920e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 169
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: H32_TETPI (Histone H3.2 (Fragment) OS=Tetrahymena pigmentosa PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.920e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 169
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: H32_TETPA (Histone H3.2 (Fragment) OS=Tetrahymena patula PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.920e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 169
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: H32_TETNI (Histone H3.2 (Fragment) OS=Tetrahymena nippisingi PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.920e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 169
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of EY692410 vs. ExPASy Swiss-Prot
Match: H32_TETNA (Histone H3.2 (Fragment) OS=Tetrahymena nanneyi PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.920e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 169
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
The following BLAST results are available for this feature:
BLAST of EY692410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3L1_LILLO2.630e-1741.13Histone H3-like 1 OS=Lilium longiflorum GN=gH3 PE=... [more]
H3L2_LILLO9.996e-1752.48Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE... [more]
H32_TETTR7.920e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena tropicalis ... [more]
H32_TETSO7.920e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena sonneborni ... [more]
H32_TETRO7.920e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena rostrata PE... [more]
H32_TETPR7.920e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena paravorax P... [more]
H32_TETPI7.920e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena pigmentosa ... [more]
H32_TETPA7.920e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena patula PE=3... [more]
H32_TETNI7.920e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena nippisingi ... [more]
H32_TETNA7.920e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena nanneyi PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-C03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692410 ID=EY692410; Name=EY692410; organism=Citrus sinensis; type=EST; length=959bp
CCACGCGTCCGGAGAAATTGAGTGGAAGAGTTGACCATACTCAGAGATGG
CCCGTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAGGCTCCTAGG
AAGCAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGG
TGTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAA
TTCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTC
CAGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTT
CCAGAGCCATGCAGTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTG
TTGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTC
ACTATTATGCCCAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCG
TGCTTAAGCGTAATTGCTGCTTGCTTCAATTGAATGACTGGAAGGGAAGG
GGGAAGTTGTAATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGTAGATA
GGGGTAGGATTCCAGTAGTTATTAGAATATGGCTTTTGTCCTCATCTGGG
TTTTGTTTTTTGGTGGTGTTTTATAATGTCTATTTGTTGATGATGGGGAT
TTTAATTTCCCCAAGGAAACAGGCTTTTTGGGGTCTTTTTGATACCCTGT
TGCCACAAAAGAGGTGGGGGATGAATCAAGATTAATTTGGGGGAAGAAAC
AAAAGCTAAGGTTGTATAATAAATCAAAAAAACATTATAATTATAGTGTT
ATAACGAACAACCTTAACATAAAAGTGAAAACAAAAACACTGGTACGCAC
TTTTCAAAAGTAATCACATATTTCACTACATAAGAACATTAATCTAGTAA
CAAATTATTTAGAATTTGGCACGCGGACATATTTTTTAATCCTAAGTAAC
CTCGCTTAT
back to top