EY692404

Overview
NameEY692404
Unique NameEY692404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length974
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692404_ssr125 microsatellite EY692404_ssr125:125..134. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.789e-28
Identity = 67/147 (45.58%), Postives = 99/147 (67.35%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            MGRGRV+LK+IEN  NRQVTFSKRR G LKKA+E+++LCDA++ VI+FS  GK++EYS+     +I   ++RY  A       + + Q+    E   +K + + L+   R Y+G+DL SL+L+D+  LEQQ++ +L  +R RK QL+
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPW--RIANIFDRYLKAPSTRF-EEMDVQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLL 144          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.789e-28
Identity = 62/147 (42.18%), Postives = 100/147 (68.03%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            MGRG++++KRI+N  +RQVTFSKRR+G  KKA E+S+LCDAEV +++FS   +L+++++ S M+ I+ERY        Q +    E+ + W  E  +L+ ++  LQ+  R  LG+ L  L ++D+Q LE +L+ +LK+IR RK+ +M
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSS-MKSIIERYNETKEDPHQTMNASSEA-KLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVM 145          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 7.561e-28
Identity = 64/146 (43.84%), Postives = 101/146 (69.18%), Query Frame = 1
Query:  169 GRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            GRG++++KRIEN  NRQVTF KRR G LKKA+E+SVLCDAEVA+I+FS +G+L+EYS +S ++  +ERY++         +    + + +  E   L+ +I  +Q + R  +GE + S+S K+++ LE +LD ++  IRS+KN+L+
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS-VKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELL 162          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 2.200e-27
Identity = 63/146 (43.15%), Postives = 101/146 (69.18%), Query Frame = 1
Query:  169 GRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            GRG++++KRIEN  NRQVTF KRR G LKKA+E+SVLCDAEVA+I+FS +G+L+EYS +S ++  +ERY++         +    + + +  E   L+ +I  +Q + R  +GE + S+S K+++ LE +L+ ++  IRS+KN+L+
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS-VKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELL 162          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.200e-27
Identity = 69/148 (46.62%), Postives = 102/148 (68.92%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQ 609
            M RG+ ++KRIEN  +RQVTFSKRR G LKKA E+SVLCDAEVA++IFS + KL+E+S+ S +   +ERY+R           +  SQ+    E + L  KI+ L+ ++R  LGE +++ S++++QQLE QLD +L  IR++K QL++
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSS-IAATIERYQRRIKEIGNNHKRNDNSQQARD-ETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLR 146          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.901e-27
Identity = 64/149 (42.95%), Postives = 99/149 (66.44%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQL-IAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKD-IQQLEQQLDTALKHIRSRKNQLM 606
            MG+G++++KRIE+   RQVTFSKRRAGFLKKA+E++VLCDA+V V++FS KGKLF++ +   +  ++E + RY    R   +           +E   L+ +ID L+ + R   GEDL S+S  D + QL+ QL+++L  + +RK++LM
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVI--LMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELM 147          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.901e-27
Identity = 70/147 (47.62%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLM 606
            MGRG++++KRIEN  +RQVTFSKRR+G LKKA E+SVLCDAEVAVI+FS  GKLFEYS+   M++ L RY  +  +       D         E + LK ++  LQ+      G+ L  L+ K++Q LEQQL  AL  +R RK +L+
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTG-MKQTLSRYGNHQSSSASKAEED-------CAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLL 139          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.401e-27
Identity = 69/148 (46.62%), Postives = 98/148 (66.22%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQ 609
            MGRG++++KRIEN  NRQVT+SKRR G LKKA EISVLCDA V+VIIF+  GK+ E+S+ S ++ IL++Y +     R+L     E+  N   E N +K   D +Q   RH  GED+ SL+ +++  LE  LD  L  IR+++N L++
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVD-ILDQYHK--LTGRRLWDAKHENLDN---EINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQNDLLR 142          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.426e-26
Identity = 67/148 (45.27%), Postives = 100/148 (67.57%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQ 609
            MGRG++++KRIEN  NRQVT+SKRR G LKKA EISVLCDA V+VIIF+  GK+ E+S+ S ++ IL++Y +     R+L+    E+  N   E N +K   D +Q   RH  GED+ SL+ +++  LE  L+  L  IR+++N++++
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVD-ILDQYHK--LTGRRLLDAKHENLDN---EINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVLR 142          
BLAST of EY692404 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.862e-26
Identity = 66/143 (46.15%), Postives = 93/143 (65.03%), Query Frame = 1
Query:  166 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEY-STDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSR 591
            MGRG++++KRIEN  NRQVTFSKRR+G LKKA EISVLCDAEV V+IFS  GKL++Y S  + + +ILE+Y+         I  D E  ++   E + +K + D +Q   RH  GEDL SL  K++  +E+ LD  + ++  +
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQ----TNSGKILWD-EKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDK 138          
The following BLAST results are available for this feature:
BLAST of EY692404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
MAD31_ORYSJ5.789e-2845.58MADS-box transcription factor 31 OS=Oryza sativa s... [more]
MAD23_ORYSJ5.789e-2842.18MADS-box transcription factor 23 OS=Oryza sativa s... [more]
AG_BRANA7.561e-2843.84Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH2.200e-2743.15Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AGL19_ARATH2.200e-2746.62Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MAD30_ORYSJ4.901e-2742.95MADS-box transcription factor 30 OS=Oryza sativa s... [more]
AGL15_ARATH4.901e-2747.62Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
GLOB_TOBAC6.401e-2746.62Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
FBP1_PETHY1.426e-2645.27Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
MADS2_ORYSJ1.862e-2646.15MADS-box transcription factor 2 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-B06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692404 ID=EY692404; Name=EY692404; organism=Citrus sinensis; type=EST; length=974bp
AGAAATCCTTTTATGAGATATCCTATTTGGGTTTCTGTTTTTGGAGGGGC
TTTGGTTGTTGGGTTTCTTTGGGGGAAAGAGAAAAAAAAAAAGAATAGAA
ATTATCAAATAATCTGTGTGAGACAGAGAGAGAGTGAGACAGATCATACA
GAAGAATTCATAACAATGGGAAGAGGTAGGGTTCAGCTGAAGAGAATAGA
GAACAAGATCAATCGCCAAGTTACCTTTTCCAAACGGAGAGCTGGCTTCT
TGAAGAAAGCTCATGAGATCTCTGTGTTATGTGATGCTGAAGTTGCTGTT
ATTATCTTCTCTCACAAAGGGAAGCTCTTTGAATACTCCACTGACTCTTG
CATGGAAAAGATACTGGAACGCTATGAGAGGTACGCCTATGCTGAGAGAC
AGCTGATTGCCCCTGATCCTGAATCACAGCGTAACTGGCCCCTGGAGTGC
AACAACCTTAAGGCTAAGATAGATCTTCTGCAGAAAAACCAAAGGCACTA
TTTGGGAGAAGATTTAGAGTCTCTGTCCCTCAAAGACATCCAACAGTTGG
AGCAACAGCTGGACACCGCTCTCAAACACATCAGATCAAGAAAAAATCAA
CTCATGCAAGAGTCCCTCTCTGAGCTTTCAGAAAAAAAGAAAAGTCTATA
GAGGAACAAAACAACTTGCTGGTAAAGCAAATTAAGGAGAAAAAAAAGGC
TGCAGCGCAACAAGCTCCAGTGGGGGAAATCAATTCCAAACCAGGTTCCC
AACCCATTATCCTTTTCAACTCCCCGGCCACCTCCTTGCTTAAAATTGGG
GGGGGCCAACCCAGGAAAAAGGGATTCGGAAAAGAAGAAGAAACAAACTT
TAACCCCCCCCCCTTGAACCCCTAATGTTCCGGGGAACCCCTTGGGAAGG
CTTTTGCGGGGAAAAAAACGGGGGGAAAAAAAAAAAAAATTTTTGGGGGG
GGGGGGGGGGGGGGGGGGGTGACA
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