EY692193

Overview
NameEY692193
Unique NameEY692193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692193_ssr343 microsatellite EY692193_ssr343:343..354. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 57/93 (61.29%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            GIRFTI+G   F   LI+NVAGAGD+    +KGS+TGW+ + RNWGQNW  NA L  Q LSF VT+SD  T TS+N+AP NW FGQTF GK F
Sbjct:  166 GIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKNF 258          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.617e-28
Identity = 57/93 (61.29%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            GIRFTI+G   F   L++NVAGAGDV+ V +KGS T WL + RNWGQNW  NA L  Q LSF V TSDG + TS N+AP NW FGQT+ GK F
Sbjct:  164 GIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSGKNF 256          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.142e-27
Identity = 57/93 (61.29%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            GIRFTI+G   F   L++NV GAGDV +V +KGSRT W  M RNWGQNW  N  L  Q LSF+VT SDG TV S N+AP +W+FGQTF G+QF
Sbjct:  160 GIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQF 252          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.142e-27
Identity = 58/93 (62.37%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            GIRFTI+G   F   LI+NV GAGDV +  IKGSRT W  M RNWGQNW  N+ L  Q LSF+VTTSDG TV S+N AP  W++GQTF G QF
Sbjct:  156 GIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQF 248          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.798e-27
Identity = 59/94 (62.77%), Postives = 69/94 (73.40%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRT-GWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            GIRFTI+G   F   LISNV GAGDV AV IKGS+T  W  M RNWGQNW  N+ + +Q LSF+VTTSDG T+ S +VAP NW FGQT++G QF
Sbjct:  160 GIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGGQF 253          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 4.773e-27
Identity = 58/94 (61.70%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTG-WLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            GIRFTI+G+  F   LI+NV GAGD+ AV +KGS+T  W  M RNWGQNW  N  L+ Q LSF+VT SDG TV SY+V P +W FGQTFEG QF
Sbjct:  162 GIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDWQFGQTFEGGQF 255          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.773e-27
Identity = 54/95 (56.84%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQFES 324
            G+RF++ GS  F   LISNV   G+VV VK+KG  T W+PM RNWGQNWH + +L  Q LSFEVT   G T+ SY+VAP  W FG T++GKQF S
Sbjct:  162 GLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQGKQFHS 256          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.233e-27
Identity = 61/104 (58.65%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    4 FREFPEVDPRVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQ 315
            +R  P V  R  GIRFTI+G   F   LI+NV GAGDV +  +KGSRTGW  M RNWGQNW  N+ L  Q LSF+VTTSDG T+ S NVA   W+FGQTF G Q
Sbjct:  147 YRRVPCV--RRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQ 248          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.389e-26
Identity = 55/96 (57.29%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   31 RVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            ++ GIRFT++G   F   L++NVAGAGD+  V +KGS+T W+ M RNWGQNW  NA L  Q LSF VT SD  + TS+NVAP  W FGQTF GK F
Sbjct:  165 KIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSGKNF 260          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.094e-26
Identity = 57/96 (59.38%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   31 RVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            R  GIRFTI+G   F   L++NV GAGDV +V +KGSRT W  M RNWGQNW  N+ L  Q LSF VTTSD  +V S+NVAP  W+FGQT+ G QF
Sbjct:  158 RSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQF 253          
The following BLAST results are available for this feature:
BLAST of EY692193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP16_ARATH5.638e-2861.29Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA9_ARATH9.617e-2861.29Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXP15_ARATH2.142e-2761.29Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP10_ARATH2.142e-2762.37Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA8_ARATH2.798e-2762.77Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA2_ARATH4.773e-2761.70Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXP20_ARATH4.773e-2756.84Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXPA1_ARATH6.233e-2758.65Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXPA3_ARATH1.389e-2657.29Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA5_ARATH3.094e-2659.38Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-098-A05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692193 ID=EY692193; Name=EY692193; organism=Citrus sinensis; type=EST; length=529bp
GGGTTCCGGGAATTTCCCGAGGTCGACCCACGCGTCCGAGGCATTCGATT
TACGATTGATGGTTCGGATATCTTCATTTCAGCGTTGATCAGCAATGTAG
CAGGTGCTGGAGATGTAGTTGCAGTGAAGATCAAGGGTTCAAGAACCGGT
TGGCTTCCAATGGGTCGGAATTGGGGCCAAAACTGGCACATAAATGCCAA
TCTGAAAAATCAACCTCTCTCATTTGAGGTCACCACTAGTGATGGCCTCA
CGGTTACATCTTATAATGTTGCTCCTAAGAATTGGAACTTTGGGCAGACC
TTTGAAGGCAAACAATTTGAGTCTTAGATTAGCACCAATAGCTTAATTAA
TTAAGTATACAGAAGAAGGTTTTTTTTTTTTTTTTGGTTGTATTCGGGTG
GAAGGTGTATGGTGGGTTTTTCTATGGCTGGGAAGATACTATTCTTCAAG
ATGTAATGATTCAGTGAATTATTGTGATTTTTGTACCTCTGTTTTGTTCC
ACAAACAATATAAAAACAAACATGAGATA
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