EY692193

Overview
NameEY692193
Unique NameEY692193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.181e-23
Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFE-GKQFE 321
            G+RFT+ G D F   L++NVAG+G V AV ++G+ TGWL M RNWG NW   A L  QPLSF VTT+ G  +   +VAP  W FGQTF   KQF+
Sbjct:  160 GVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGWKFGQTFSTSKQFD 254          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.461e-23
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTG-WLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 318
            GIRFTI+G   F   L++NV GAGDV AV +K  R+  W  + RNWGQNW   A L  Q LSF VTT DG +V S N  P+ W+FGQTF G QF
Sbjct:  197 GIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQF 290          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.132e-23
Identity = 49/88 (55.68%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTF 303
            GIRFTI G D F    + NV G+G V  V IKGS+T W+ M RNWGQNW  NA L  Q LSF+V   D   VT +N+AP NWNFG T+
Sbjct:  155 GIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNWNFGTTY 242          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.217e-22
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTF 303
            G+RF I+G D F    I NV GAG + +V IKGS+TGWL M RNWG NW  NA L  Q LSF +TT+DG T    NV P +W+FGQ +
Sbjct:  159 GVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIY 246          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 2.710e-22
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGK 312
            G++F + G+   ++ L  NV GAGD++AV  KGS+T W+ M R WGQNW  N NL  Q +S  VTTSDG+T    +V P +W FGQTF+GK
Sbjct:  169 GVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDGK 259          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.539e-22
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   31 RVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQ 315
            R  G+RFT+ G + F   LI+NVAG+G V A+ +KGS+TGW+P+ RNWG NW  N+ L  Q LSF VT++ G T+   +V P+ W FG TF   Q
Sbjct:  157 RQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWWEFGTTFTSNQ 251          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.539e-22
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   31 RVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQ 315
            R  GIRFT+ G + F   L+SNVAG+G V +V +KG  TGW+ + RNWG NW  N+ L  Q LSF VT++ G T+  YNV P  W+FG TF   Q
Sbjct:  157 RQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWWSFGMTFTSNQ 251          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 7.885e-22
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   31 RVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTF 303
            R  GIRF I G D F    ++NV G+G V  + IKGS TGW+ M RNWG NW  NA L  Q LSF V   DG  VT++NVAP NW FG T+
Sbjct:  158 RSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNWFFGATY 248          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 5.111e-21
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   31 RVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQ 315
            R  G+RFTI G + F   L++N+AG+G + ++ +KGS TGW+ M RNWG NW   A L  Q LSF VT++ G T+   +V P  W+FGQTF   Q
Sbjct:  151 RSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGWSFGQTFSTYQ 245          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.139e-20
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   31 RVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTF 303
            R  GIRF ++G   F   L++NV G+G V  + IKGS TGW+ M RNWG NW  NA L  Q LSF V   DG  VT+ +VAP  W+FG T+
Sbjct:  154 RSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGWSFGATY 244          
The following BLAST results are available for this feature:
BLAST of EY692193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP27_ORYSJ4.181e-2353.68Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXPA5_ORYSJ5.461e-2355.32Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP33_ORYSJ7.132e-2355.68Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH1.217e-2254.55Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP21_ARATH2.710e-2250.55Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP28_ORYSJ3.539e-2249.47Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ3.539e-2250.53Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA3_ORYSJ7.885e-2253.85Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP18_ORYSJ5.111e-2147.37Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ1.139e-2050.55Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-098-A05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692193 ID=EY692193; Name=EY692193; organism=Citrus sinensis; type=EST; length=529bp
GGGTTCCGGGAATTTCCCGAGGTCGACCCACGCGTCCGAGGCATTCGATT
TACGATTGATGGTTCGGATATCTTCATTTCAGCGTTGATCAGCAATGTAG
CAGGTGCTGGAGATGTAGTTGCAGTGAAGATCAAGGGTTCAAGAACCGGT
TGGCTTCCAATGGGTCGGAATTGGGGCCAAAACTGGCACATAAATGCCAA
TCTGAAAAATCAACCTCTCTCATTTGAGGTCACCACTAGTGATGGCCTCA
CGGTTACATCTTATAATGTTGCTCCTAAGAATTGGAACTTTGGGCAGACC
TTTGAAGGCAAACAATTTGAGTCTTAGATTAGCACCAATAGCTTAATTAA
TTAAGTATACAGAAGAAGGTTTTTTTTTTTTTTTTGGTTGTATTCGGGTG
GAAGGTGTATGGTGGGTTTTTCTATGGCTGGGAAGATACTATTCTTCAAG
ATGTAATGATTCAGTGAATTATTGTGATTTTTGTACCTCTGTTTTGTTCC
ACAAACAATATAAAAACAAACATGAGATA
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