EY692193

Overview
NameEY692193
Unique NameEY692193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692193_ssr343 microsatellite EY692193_ssr343:343..354. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.289e-18
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 1
Query:    4 FREFPEVDPRVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGS-RTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFE 306
            +R  P V  +V GIR+TI G+  F   ++SNV GAGDV  + +KG+ R  W P+ RNWGQ W  +  L  + L+F V T D    TS++V P +W FG T++
Sbjct:  164 YRRVPCV--KVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDWQFGVTYQ 263          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.908e-18
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTF 303
            G+RFT+ G + F   LISNVAG+G + +V +KG  T  +P+ RNWG NW  +A L  Q L+F VT++ G T+   N+ P  W FGQ+F
Sbjct:  165 GVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWWKFGQSF 252          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.908e-18
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   40 GIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRT-GWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTF 303
            G+RFTI+G D F   L++NV  AG + A+ +KGS++  W+ M  NWG  WH  A L  Q LSF VT +DG T+   NV    W FGQTF
Sbjct:  167 GVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGWRFGQTF 255          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.178e-17
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   31 RVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGS-RTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQ 315
            R  GI++TI G+  +   ++ NV GAGDVV + +KG+ R  W P+ R+WGQ W   ANL  + L+F V T D    TS+ VAP++W +  T++ K+
Sbjct:  193 RQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTYQAKK 288          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 7.637e-17
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   31 RVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNF-GQTFEGK 312
            ++ G++F I G+  F+  L  NV GAG V A++IKG+RT W+ M +NWGQ W     L  Q LSF +TTSDG+     +V P +W   GQ+F+GK
Sbjct:  215 KIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDWKCNGQSFDGK 309          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.222e-16
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   31 RVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTT-SDGLTVTSYNVAPKNWNFGQTFE 306
            R  G+RF   G+  ++   + NV GAGD+ ++ +KGSRT W+ M  NWG ++   ++L  Q LSF VT+ + G T+ ++NVAP NW+ G+T++
Sbjct:  164 RSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANWSGGKTYK 256          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.790e-16
Identity = 36/95 (37.89%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   31 RVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTT-SDGLTVTSYNVAPKNWNFGQTFEGK 312
            ++ GIRF  +G+  ++   + NV G GD+  + +KGSRTGW+ M  NWG ++   ++L  Q LSF +T+ +   T+ +YN AP +W+ G+T++ K
Sbjct:  159 KIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTYQSK 253          
BLAST of EY692193 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.003e-13
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   31 RVRGIRFTIDGSDIFISALISNVAGAGDVVAVKIK-GSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTT-SDGLTVTSYNVAPKNWNFGQTFEGK 312
            R  G+RF + G+  ++ A + NVAGAGDV  + +K G   GW+ M  NWG ++   A L  Q LSF+VT+ + G T+ +  V P +W FG T++ +
Sbjct:  167 RAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTYQAR 262          
The following BLAST results are available for this feature:
BLAST of EY692193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP32_ORYSJ5.289e-1843.14Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ6.908e-1846.59Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ6.908e-1848.31Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ1.178e-1741.67Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ARATH7.637e-1745.26Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXPA7_ARATH2.222e-1640.86Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP18_ARATH3.790e-1637.89Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP30_ORYSJ3.003e-1339.58Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-098-A05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692193 ID=EY692193; Name=EY692193; organism=Citrus sinensis; type=EST; length=529bp
GGGTTCCGGGAATTTCCCGAGGTCGACCCACGCGTCCGAGGCATTCGATT
TACGATTGATGGTTCGGATATCTTCATTTCAGCGTTGATCAGCAATGTAG
CAGGTGCTGGAGATGTAGTTGCAGTGAAGATCAAGGGTTCAAGAACCGGT
TGGCTTCCAATGGGTCGGAATTGGGGCCAAAACTGGCACATAAATGCCAA
TCTGAAAAATCAACCTCTCTCATTTGAGGTCACCACTAGTGATGGCCTCA
CGGTTACATCTTATAATGTTGCTCCTAAGAATTGGAACTTTGGGCAGACC
TTTGAAGGCAAACAATTTGAGTCTTAGATTAGCACCAATAGCTTAATTAA
TTAAGTATACAGAAGAAGGTTTTTTTTTTTTTTTTGGTTGTATTCGGGTG
GAAGGTGTATGGTGGGTTTTTCTATGGCTGGGAAGATACTATTCTTCAAG
ATGTAATGATTCAGTGAATTATTGTGATTTTTGTACCTCTGTTTTGTTCC
ACAAACAATATAAAAACAAACATGAGATA
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