EY692188

Overview
NameEY692188
Unique NameEY692188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692188 vs. ExPASy Swiss-Prot
Match: ARP3_DICDI (Actin-related protein 3 OS=Dictyostelium discoideum GN=arpC PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.608e-12
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 2
Query:   62 NSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMK----------------IKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 331
            ++I  C +D R+ LY NIVLSGGSTMF     R+ +++       +K                + V++   ++Y+VW GGS+LAS   F  +  +K +YDE GPSI
Sbjct:  302 DTIQSCPIDCRRGLYKNIVLSGGSTMFKDFGKRLQRDVKRSVDYRIKRSEELSGGKIKAVPLAVNVISHNMQRYAVWFGGSMLASTPEFYNVCHTKAQYDEIGPSI 407          
BLAST of EY692188 vs. ExPASy Swiss-Prot
Match: ACTL8_HUMAN (Actin-like protein 8 OS=Homo sapiens GN=ACTL8 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 33/101 (32.67%), Postives = 54/101 (53.47%), Query Frame = 2
Query:   14 PSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE 316
            P +       I      S+  C++ +R  L  +++  GG+T++PG   R+ +E+     SS K  V     R +SVW+G S++A LST+Q  W+S+ EY E
Sbjct:  262 PQVFEQPGPSIPRAIVESVESCEISLRPLLVSHVMACGGNTLYPGFTKRLFRELMGDHVSSTKATVWEGSNRNFSVWLGASVVAHLSTYQSEWMSREEYGE 362          
BLAST of EY692188 vs. ExPASy Swiss-Prot
Match: ARP3_YEAST (Actin-related protein 3 OS=Saccharomyces cerevisiae GN=ARP3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 35/104 (33.65%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   65 SIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA--------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIV 334
            +I  C +D+RK LY NIVLSGGSTMF     R+ +++ ++                + + + V++  +++ +VW GGS+LA  + F+    +K +Y+E GP IV
Sbjct:  337 TIQACPIDVRKGLYNNIVLSGGSTMFKDFGRRLQRDLKSIVNNRIAQSELLSGTKSTGVDVSVISHRKQRNAVWFGGSLLAQTAEFKGYCHTKKDYEEYGPEIV 440          
BLAST of EY692188 vs. ExPASy Swiss-Prot
Match: ARP6_DROME (Actin-like protein 13E OS=Drosophila melanogaster GN=Actr13E PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.339e-11
Identity = 30/103 (29.13%), Postives = 57/103 (55.34%), Query Frame = 2
Query:   14 PSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 322
            PS IG++  GI E   + +  C  +  ++L  NI++ GGS  FPG   R+ +++ AL P  +++ ++ P +     W GG  +A+   F++   ++ +Y+E G
Sbjct:  289 PSDIGVQQVGIPEAVADCLKACPWEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALVPDDLEVSLICPEDPVRYAWYGGKEVATSPNFEEFVYTQDDYEEYG 391          
BLAST of EY692188 vs. ExPASy Swiss-Prot
Match: ARP3_ORYSJ (Actin-related protein 3 OS=Oryza sativa subsp. japonica GN=ARP3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.339e-11
Identity = 38/112 (33.93%), Postives = 59/112 (52.68%), Query Frame = 2
Query:   44 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSM----------------KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 331
            +H      I    +D R+ LY NIVLSGGSTMF     R+ +++  +  + +                ++ VV+ P ++Y+VW GGS+LAS + F +   +K EY+E G SI
Sbjct:  306 LHVVIDKCIQSSPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASNARLGGDAKAQPIEVNVVSHPIQRYAVWFGGSVLASTAEFYEACHTKAEYEEYGASI 417          
BLAST of EY692188 vs. ExPASy Swiss-Prot
Match: ARP3_ORYSI (Actin-related protein 3 OS=Oryza sativa subsp. indica GN=ARP3 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.339e-11
Identity = 38/112 (33.93%), Postives = 59/112 (52.68%), Query Frame = 2
Query:   44 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSM----------------KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 331
            +H      I    +D R+ LY NIVLSGGSTMF     R+ +++  +  + +                ++ VV+ P ++Y+VW GGS+LAS + F +   +K EY+E G SI
Sbjct:  306 LHVVIDKCIQSSPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASNARLGGDAKAQPIEVNVVSHPIQRYAVWFGGSVLASTAEFYEACHTKAEYEEYGASI 417          
BLAST of EY692188 vs. ExPASy Swiss-Prot
Match: ARP5_HUMAN (Actin-related protein 5 OS=Homo sapiens GN=ACTR5 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 39/113 (34.51%), Postives = 58/113 (51.33%), Query Frame = 2
Query:   11 QPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA-SLSTFQQMWISKGEYDESGPSIVHRKC 346
            QPSLIG E AGI ET    + +   DI++ L  N+ L+GG+TM+PG+  RM KE+  + P     +V          W G    A +     ++WI++ EY+E G   +   C
Sbjct:  457 QPSLIGEEQAGIAETLQYILDRYPKDIQEMLVQNVFLTGGNTMYPGMKARMEKELLEMRPFRSSFQVQLASNPVLDAWYGARDWALNHLDDNEVWITRKEYEEKGGEYLKEHC 569          
BLAST of EY692188 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSJ (Actin-related protein 8 OS=Oryza sativa subsp. japonica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 40/119 (33.61%), Postives = 68/119 (57.14%), Query Frame = 2
Query:   11 QPSLIGMEAAGIHETTYNSIMKC---DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS--SMKIKVVAPPERKYSVWIGGSILASLSTFQQMW-ISKGEYDE----SGPSIVH 337
            QP + G+ A G+H+     +  C   +V    + Y  +VLSGGS+  PG+++R+ KE+  L P+  S  I+V+ PP    S W G  +++++STF + W I K ++ +    +GPS V+
Sbjct:  364 QPQIGGVRAMGLHKAVSLCMDHCYNSEVFGDDNWYKTVVLSGGSSCLPGLSERLEKELRELLPAHISEGIRVIPPPFGTDSAWFGAKMISNVSTFTEAWCIKKKQFRQKTRRNGPSFVN 482          
BLAST of EY692188 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSI (Actin-related protein 8 OS=Oryza sativa subsp. indica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 40/119 (33.61%), Postives = 68/119 (57.14%), Query Frame = 2
Query:   11 QPSLIGMEAAGIHETTYNSIMKC---DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS--SMKIKVVAPPERKYSVWIGGSILASLSTFQQMW-ISKGEYDE----SGPSIVH 337
            QP + G+ A G+H+     +  C   +V    + Y  +VLSGGS+  PG+++R+ KE+  L P+  S  I+V+ PP    S W G  +++++STF + W I K ++ +    +GPS V+
Sbjct:  364 QPQIGGVRAMGLHKAVSLCMDHCYNSEVFGDDNWYKTVVLSGGSSCLPGLSERLEKELRELLPAHISEGIRVIPPPFGTDSAWFGAKMISNVSTFTEAWCIKKKQFRQKTRRNGPSFVN 482          
The following BLAST results are available for this feature:
BLAST of EY692188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
ARP3_DICDI3.608e-1235.85Actin-related protein 3 OS=Dictyostelium discoideu... [more]
ACTL8_HUMAN4.712e-1232.67Actin-like protein 8 OS=Homo sapiens GN=ACTL8 PE=2... [more]
ARP3_YEAST1.050e-1133.65Actin-related protein 3 OS=Saccharomyces cerevisia... [more]
ARP6_DROME2.339e-1129.13Actin-like protein 13E OS=Drosophila melanogaster ... [more]
ARP3_ORYSJ2.339e-1133.93Actin-related protein 3 OS=Oryza sativa subsp. jap... [more]
ARP3_ORYSI2.339e-1133.93Actin-related protein 3 OS=Oryza sativa subsp. ind... [more]
ARP5_HUMAN5.210e-1134.51Actin-related protein 5 OS=Homo sapiens GN=ACTR5 P... [more]
ARP8_ORYSJ6.805e-1133.61Actin-related protein 8 OS=Oryza sativa subsp. jap... [more]
ARP8_ORYSI6.805e-1133.61Actin-related protein 8 OS=Oryza sativa subsp. ind... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-097-H12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692188 ID=EY692188; Name=EY692188; organism=Citrus sinensis; type=EST; length=852bp
CCCGCGTCCGCAGCCATCTCTCATCGGAATGGAAGCTGCTGGTATTCATG
AGACTACCTACAACTCCATCATGAAGTGTGATGTGGATATTAGAAAGGAT
CTGTATGGTAACATTGTTCTCAGTGGGGGTTCAACTATGTTCCCTGGTAT
TGCCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGA
AGATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGA
GGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAA
GGGCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCT
AAGTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAATTGGT
TTTTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCT
AAGGATGGGGGCATTGAAGGAGGGATATCTCGATATTGATGTTATTATAC
AAGCTTTCTTACGCCGTTTGAGGGGGGCCTTATTTCTGTTCTCCAACCAT
CTTACTAGACTTGCATTTCATCGGGGGTTCAACCAAGTCTTTTTTTAATT
TTTTTTCCCTTTTTTTACGTTAAACAAAGAAAGTTTGTAACCTGGTCAAT
AAAAAGGAGGACCGCCAAGCGCTTGCCTCACTCTCACTACCCACGACCAC
ACGACTTGGACTGGAACCATACAACACCACCATCCTCAAACAGAGAGTCA
AAACGGAAAACAAATAAAGGGAAGACAAAAGGAATTCATACTAAAGTCTC
GCCGTTCACCGGCCAACCGCTCTAAAATATTATAAAAATTGCTGTATGAA
AA
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